Gene : Potri.008G040700 P. trichocarpa v3.0
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  407
Name:  ? Potri.008G040700 Secondary Identifier:  ? PAC:27039682
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa ARO-PWY Populus trichocarpa pathologic  
Ptrichocarpa PWY-6163 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.008G040700 0.5kb upstream 0.5kb upstream 5104 true Chr08: 2301809-2306912 Populus trichocarpa
Potri.008G040700 0.5kb upstream 0.5kb upstream 500 false Chr08: 2306413-2306912 Populus trichocarpa
Potri.008G040700 0.5kb downstream 0.5kb downstream 5104 true Chr08: 2301309-2306412 Populus trichocarpa
Potri.008G040700 0.5kb downstream 0.5kb downstream 500 false Chr08: 2301309-2301808 Populus trichocarpa
Potri.008G040700 1.0kb upstream 1.0kb upstream 5604 true Chr08: 2301809-2307412 Populus trichocarpa
Potri.008G040700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2306413-2307412 Populus trichocarpa
Potri.008G040700 1.0kb downstream 1.0kb downstream 5604 true Chr08: 2300809-2306412 Populus trichocarpa
Potri.008G040700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2300809-2301808 Populus trichocarpa
Potri.008G040700 2.0kb upstream 2.0kb upstream 6604 true Chr08: 2301809-2308412 Populus trichocarpa
Potri.008G040700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2306413-2308412 Populus trichocarpa
Potri.008G040700 2.0kb downstream 2.0kb downstream 6604 true Chr08: 2299809-2306412 Populus trichocarpa
Potri.008G040700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2299809-2301808 Populus trichocarpa
Potri.008G040700 5.0kb upstream 5.0kb upstream 9604 true Chr08: 2301809-2311412 Populus trichocarpa
Potri.008G040700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2306413-2311412 Populus trichocarpa
Potri.008G040700 5.0kb downstream 5.0kb downstream 9604 true Chr08: 2296809-2306412 Populus trichocarpa
Potri.008G040700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2296809-2301808 Populus trichocarpa
Potri.008G040700 10.0kb upstream 10.0kb upstream 14604 true Chr08: 2301809-2316412 Populus trichocarpa
Potri.008G040700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2306413-2316412 Populus trichocarpa
Potri.008G040700 10.0kb downstream 10.0kb downstream 14604 true Chr08: 2291809-2306412 Populus trichocarpa
Potri.008G040700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2291809-2301808 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.378        
cufflinks 5.859        
cufflinks 3.171        
cufflinks 1.776       Low
cufflinks 1.189       Low
cufflinks 2.557        
cufflinks 4.546        
cufflinks 6.718       High
cufflinks 3.056        
cufflinks 5.703        
cufflinks 7.151       High
cufflinks 3.169        
cufflinks 3.688        
cufflinks 6.887       High
cufflinks 2.32        
cufflinks 5.67        
cufflinks 3.138        
cufflinks 4.508        
cufflinks 1.086       Low
cufflinks 1.808       Low
cufflinks 3.757        
cufflinks 7.222       High
cufflinks 3.003        
cufflinks 3.996        
cufflinks 19.603        
cufflinks 8.511       Low
cufflinks 8.999       Low
cufflinks 7.581       Low
cufflinks 13.833        
cufflinks 11.738        

0 Strain