Gene : Potri.010G135500 P. trichocarpa v3.0
Defline:  (1 of 1) 2.2.1.9 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase / SEPHCHC synthase Genomic Order:  1355
Name:  ? Potri.010G135500 Secondary Identifier:  ? PAC:26980358
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-5837 Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.010G135500 0.5kb upstream 0.5kb upstream 17080 true Chr10: 14928077-14945156 Populus trichocarpa
Potri.010G135500 0.5kb upstream 0.5kb upstream 500 false Chr10: 14928077-14928576 Populus trichocarpa
Potri.010G135500 0.5kb downstream 0.5kb downstream 17080 true Chr10: 14928577-14945656 Populus trichocarpa
Potri.010G135500 0.5kb downstream 0.5kb downstream 500 false Chr10: 14945157-14945656 Populus trichocarpa
Potri.010G135500 1.0kb upstream 1.0kb upstream 17580 true Chr10: 14927577-14945156 Populus trichocarpa
Potri.010G135500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 14927577-14928576 Populus trichocarpa
Potri.010G135500 1.0kb downstream 1.0kb downstream 17580 true Chr10: 14928577-14946156 Populus trichocarpa
Potri.010G135500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 14945157-14946156 Populus trichocarpa
Potri.010G135500 2.0kb upstream 2.0kb upstream 18580 true Chr10: 14926577-14945156 Populus trichocarpa
Potri.010G135500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 14926577-14928576 Populus trichocarpa
Potri.010G135500 2.0kb downstream 2.0kb downstream 18580 true Chr10: 14928577-14947156 Populus trichocarpa
Potri.010G135500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 14945157-14947156 Populus trichocarpa
Potri.010G135500 5.0kb upstream 5.0kb upstream 21580 true Chr10: 14923577-14945156 Populus trichocarpa
Potri.010G135500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 14923577-14928576 Populus trichocarpa
Potri.010G135500 5.0kb downstream 5.0kb downstream 21580 true Chr10: 14928577-14950156 Populus trichocarpa
Potri.010G135500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 14945157-14950156 Populus trichocarpa
Potri.010G135500 10.0kb upstream 10.0kb upstream 26580 true Chr10: 14918577-14945156 Populus trichocarpa
Potri.010G135500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 14918577-14928576 Populus trichocarpa
Potri.010G135500 10.0kb downstream 10.0kb downstream 26580 true Chr10: 14928577-14955156 Populus trichocarpa
Potri.010G135500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 14945157-14955156 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.502        
cufflinks 1.085        
cufflinks 2.125       High
cufflinks 0.178       Low
cufflinks 1.711       High
cufflinks 0.888        
cufflinks 1.919       High
cufflinks 0.291       Low
cufflinks 1.095        
cufflinks 0.55        
cufflinks 1.019        
cufflinks 1.305        
cufflinks 0.387        
cufflinks 1.573       High
cufflinks 0.433        
cufflinks 0.212       Low
cufflinks 1.384        
cufflinks 0.247       Low
cufflinks 1.205        
cufflinks 1.266        
cufflinks 0.474        
cufflinks 0.489        
cufflinks 0.436        
cufflinks 0.665        
cufflinks 7.043        
cufflinks 7.597        
cufflinks 8.863       High
cufflinks 6.903        
cufflinks 6.585        
cufflinks 7.579        

0 Strain