Gene : Potri.011G024900 P. trichocarpa v3.0

Defline:  (1 of 1) PTHR10314:SF123 - TRYPTOPHAN SYNTHASE BETA CHAIN-LIKE PROTEIN Genomic Order:  249
Name:  ? Potri.011G024900 Secondary Identifier:  ? PAC:27002678

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRPSYN-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G024900 0.5kb upstream 0.5kb upstream 2887 true Chr11: 2052038-2054924 Populus trichocarpa
Potri.011G024900 0.5kb upstream 0.5kb upstream 500 false Chr11: 2054425-2054924 Populus trichocarpa
Potri.011G024900 0.5kb downstream 0.5kb downstream 2887 true Chr11: 2051538-2054424 Populus trichocarpa
Potri.011G024900 0.5kb downstream 0.5kb downstream 500 false Chr11: 2051538-2052037 Populus trichocarpa
Potri.011G024900 1.0kb upstream 1.0kb upstream 3387 true Chr11: 2052038-2055424 Populus trichocarpa
Potri.011G024900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2054425-2055424 Populus trichocarpa
Potri.011G024900 1.0kb downstream 1.0kb downstream 3387 true Chr11: 2051038-2054424 Populus trichocarpa
Potri.011G024900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2051038-2052037 Populus trichocarpa
Potri.011G024900 2.0kb upstream 2.0kb upstream 4387 true Chr11: 2052038-2056424 Populus trichocarpa
Potri.011G024900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2054425-2056424 Populus trichocarpa
Potri.011G024900 2.0kb downstream 2.0kb downstream 4387 true Chr11: 2050038-2054424 Populus trichocarpa
Potri.011G024900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2050038-2052037 Populus trichocarpa
Potri.011G024900 5.0kb upstream 5.0kb upstream 7387 true Chr11: 2052038-2059424 Populus trichocarpa
Potri.011G024900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2054425-2059424 Populus trichocarpa
Potri.011G024900 5.0kb downstream 5.0kb downstream 7387 true Chr11: 2047038-2054424 Populus trichocarpa
Potri.011G024900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2047038-2052037 Populus trichocarpa
Potri.011G024900 10.0kb upstream 10.0kb upstream 12387 true Chr11: 2052038-2064424 Populus trichocarpa
Potri.011G024900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2054425-2064424 Populus trichocarpa
Potri.011G024900 10.0kb downstream 10.0kb downstream 12387 true Chr11: 2042038-2054424 Populus trichocarpa
Potri.011G024900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2042038-2052037 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.958        
cufflinks 0.372        
cufflinks 0.04     Low Low
cufflinks 0.612        
cufflinks 0.013     Low Low
cufflinks 0.192        
cufflinks 2.492        
cufflinks 6.672       High
cufflinks 0.095     Low  
cufflinks 0.747        
cufflinks 0.067     Low  
cufflinks 1.303        
cufflinks 5.772       High
cufflinks 0.18        
cufflinks 0.02     Low Low
cufflinks 0.255        
cufflinks 5.741       High
cufflinks 0.023     Low Low
cufflinks 0.22        
cufflinks 0.275        
cufflinks 17.296     High High
cufflinks 0.096     Low  
cufflinks 5.448       High
cufflinks 0.355        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain