Gene : Potri.019G071400 P. trichocarpa v3.0
Defline:  (1 of 2) K01892 - histidyl-tRNA synthetase (HARS, hisS) Genomic Order:  714
Name:  ? Potri.019G071400 Secondary Identifier:  ? PAC:27025986
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa TRNA-CHARGING-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.019G071400 0.5kb upstream 0.5kb upstream 9405 true Chr19: 10543295-10552699 Populus trichocarpa
Potri.019G071400 0.5kb upstream 0.5kb upstream 500 false Chr19: 10552200-10552699 Populus trichocarpa
Potri.019G071400 0.5kb downstream 0.5kb downstream 9405 true Chr19: 10542795-10552199 Populus trichocarpa
Potri.019G071400 0.5kb downstream 0.5kb downstream 500 false Chr19: 10542795-10543294 Populus trichocarpa
Potri.019G071400 1.0kb upstream 1.0kb upstream 9905 true Chr19: 10543295-10553199 Populus trichocarpa
Potri.019G071400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 10552200-10553199 Populus trichocarpa
Potri.019G071400 1.0kb downstream 1.0kb downstream 9905 true Chr19: 10542295-10552199 Populus trichocarpa
Potri.019G071400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 10542295-10543294 Populus trichocarpa
Potri.019G071400 2.0kb upstream 2.0kb upstream 10905 true Chr19: 10543295-10554199 Populus trichocarpa
Potri.019G071400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 10552200-10554199 Populus trichocarpa
Potri.019G071400 2.0kb downstream 2.0kb downstream 10905 true Chr19: 10541295-10552199 Populus trichocarpa
Potri.019G071400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 10541295-10543294 Populus trichocarpa
Potri.019G071400 5.0kb upstream 5.0kb upstream 13905 true Chr19: 10543295-10557199 Populus trichocarpa
Potri.019G071400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 10552200-10557199 Populus trichocarpa
Potri.019G071400 5.0kb downstream 5.0kb downstream 13905 true Chr19: 10538295-10552199 Populus trichocarpa
Potri.019G071400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 10538295-10543294 Populus trichocarpa
Potri.019G071400 10.0kb upstream 10.0kb upstream 18905 true Chr19: 10543295-10562199 Populus trichocarpa
Potri.019G071400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 10552200-10562199 Populus trichocarpa
Potri.019G071400 10.0kb downstream 10.0kb downstream 18905 true Chr19: 10533295-10552199 Populus trichocarpa
Potri.019G071400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 10533295-10543294 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.931       Low
cufflinks 3.741        
cufflinks 7.494       High
cufflinks 3.652        
cufflinks 5.535        
cufflinks 4.694        
cufflinks 2.975       Low
cufflinks 6.548        
cufflinks 4.728        
cufflinks 5.073        
cufflinks 7.053       High
cufflinks 2.969       Low
cufflinks 7.549       High
cufflinks 4.169        
cufflinks 3.577       Low
cufflinks 4.588        
cufflinks 3.972        
cufflinks 4.979        
cufflinks 9.026     High High
cufflinks 5.678        
cufflinks 7.089       High
cufflinks 4.906        
cufflinks 5.731        
cufflinks 7.849       High
cufflinks 19.82       Low
cufflinks 27.23     High  
cufflinks 26.795     High  
cufflinks 27.527        
cufflinks 27.015        
cufflinks 25.025        

0 Strain