Gene : Potri.011G113900 P. trichocarpa v3.0
Defline:  (1 of 5) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB) Genomic Order:  1139
Name:  ? Potri.011G113900 Secondary Identifier:  ? PAC:27000718
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ptrichocarpa PWY-101 Populus trichocarpa pathologic  
Ptrichocarpa PHOTOALL-PWY Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G113900 0.5kb upstream 0.5kb upstream 2027 true Chr11: 13861381-13863407 Populus trichocarpa
Potri.011G113900 0.5kb upstream 0.5kb upstream 500 false Chr11: 13862908-13863407 Populus trichocarpa
Potri.011G113900 0.5kb downstream 0.5kb downstream 2027 true Chr11: 13860881-13862907 Populus trichocarpa
Potri.011G113900 0.5kb downstream 0.5kb downstream 500 false Chr11: 13860881-13861380 Populus trichocarpa
Potri.011G113900 1.0kb upstream 1.0kb upstream 2527 true Chr11: 13861381-13863907 Populus trichocarpa
Potri.011G113900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 13862908-13863907 Populus trichocarpa
Potri.011G113900 1.0kb downstream 1.0kb downstream 2527 true Chr11: 13860381-13862907 Populus trichocarpa
Potri.011G113900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 13860381-13861380 Populus trichocarpa
Potri.011G113900 2.0kb upstream 2.0kb upstream 3527 true Chr11: 13861381-13864907 Populus trichocarpa
Potri.011G113900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 13862908-13864907 Populus trichocarpa
Potri.011G113900 2.0kb downstream 2.0kb downstream 3527 true Chr11: 13859381-13862907 Populus trichocarpa
Potri.011G113900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 13859381-13861380 Populus trichocarpa
Potri.011G113900 5.0kb upstream 5.0kb upstream 6527 true Chr11: 13861381-13867907 Populus trichocarpa
Potri.011G113900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 13862908-13867907 Populus trichocarpa
Potri.011G113900 5.0kb downstream 5.0kb downstream 6527 true Chr11: 13856381-13862907 Populus trichocarpa
Potri.011G113900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 13856381-13861380 Populus trichocarpa
Potri.011G113900 10.0kb upstream 10.0kb upstream 11527 true Chr11: 13861381-13872907 Populus trichocarpa
Potri.011G113900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 13862908-13872907 Populus trichocarpa
Potri.011G113900 10.0kb downstream 10.0kb downstream 11527 true Chr11: 13851381-13862907 Populus trichocarpa
Potri.011G113900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 13851381-13861380 Populus trichocarpa

0 Protein Family

40 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.676        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.783        
cufflinks 3.199        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.923        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.542       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.159       High
cufflinks 0.441       Low
cufflinks 0.616       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.423       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.214       High
cufflinks 1.522        
cufflinks 2.892        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.619        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain