Gene : Gorai.001G213000 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  2130
Name:  ? Gorai.001G213000 Secondary Identifier:  ? PAC:26822232
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G213000 0.5kb upstream 0.5kb upstream 1385 true Chr01: 42542792-42544176 Gossypium raimondii
Gorai.001G213000 0.5kb upstream 0.5kb upstream 500 false Chr01: 42542792-42543291 Gossypium raimondii
Gorai.001G213000 0.5kb downstream 0.5kb downstream 1385 true Chr01: 42543292-42544676 Gossypium raimondii
Gorai.001G213000 0.5kb downstream 0.5kb downstream 500 false Chr01: 42544177-42544676 Gossypium raimondii
Gorai.001G213000 1.0kb upstream 1.0kb upstream 1885 true Chr01: 42542292-42544176 Gossypium raimondii
Gorai.001G213000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42542292-42543291 Gossypium raimondii
Gorai.001G213000 1.0kb downstream 1.0kb downstream 1885 true Chr01: 42543292-42545176 Gossypium raimondii
Gorai.001G213000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42544177-42545176 Gossypium raimondii
Gorai.001G213000 2.0kb upstream 2.0kb upstream 2885 true Chr01: 42541292-42544176 Gossypium raimondii
Gorai.001G213000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42541292-42543291 Gossypium raimondii
Gorai.001G213000 2.0kb downstream 2.0kb downstream 2885 true Chr01: 42543292-42546176 Gossypium raimondii
Gorai.001G213000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42544177-42546176 Gossypium raimondii
Gorai.001G213000 5.0kb upstream 5.0kb upstream 5885 true Chr01: 42538292-42544176 Gossypium raimondii
Gorai.001G213000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42538292-42543291 Gossypium raimondii
Gorai.001G213000 5.0kb downstream 5.0kb downstream 5885 true Chr01: 42543292-42549176 Gossypium raimondii
Gorai.001G213000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42544177-42549176 Gossypium raimondii
Gorai.001G213000 10.0kb upstream 10.0kb upstream 10885 true Chr01: 42533292-42544176 Gossypium raimondii
Gorai.001G213000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42533292-42543291 Gossypium raimondii
Gorai.001G213000 10.0kb downstream 10.0kb downstream 10885 true Chr01: 42543292-42554176 Gossypium raimondii
Gorai.001G213000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42544177-42554176 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123804280 5264 Brassicales-Malvales Singleton cluster - no MSA
124301324 5266 SBM Singleton cluster - no MSA
124254114 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain