Gene : Gorai.001G234300 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  2343
Name:  ? Gorai.001G234300 Secondary Identifier:  ? PAC:26822762
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.001G234300 0.5kb upstream 0.5kb upstream 1565 true Chr01: 47176863-47178427 Gossypium raimondii
Gorai.001G234300 0.5kb upstream 0.5kb upstream 500 false Chr01: 47176863-47177362 Gossypium raimondii
Gorai.001G234300 0.5kb downstream 0.5kb downstream 1565 true Chr01: 47177363-47178927 Gossypium raimondii
Gorai.001G234300 0.5kb downstream 0.5kb downstream 500 false Chr01: 47178428-47178927 Gossypium raimondii
Gorai.001G234300 1.0kb upstream 1.0kb upstream 2065 true Chr01: 47176363-47178427 Gossypium raimondii
Gorai.001G234300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47176363-47177362 Gossypium raimondii
Gorai.001G234300 1.0kb downstream 1.0kb downstream 2065 true Chr01: 47177363-47179427 Gossypium raimondii
Gorai.001G234300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47178428-47179427 Gossypium raimondii
Gorai.001G234300 2.0kb upstream 2.0kb upstream 3065 true Chr01: 47175363-47178427 Gossypium raimondii
Gorai.001G234300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47175363-47177362 Gossypium raimondii
Gorai.001G234300 2.0kb downstream 2.0kb downstream 3065 true Chr01: 47177363-47180427 Gossypium raimondii
Gorai.001G234300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47178428-47180427 Gossypium raimondii
Gorai.001G234300 5.0kb upstream 5.0kb upstream 6065 true Chr01: 47172363-47178427 Gossypium raimondii
Gorai.001G234300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47172363-47177362 Gossypium raimondii
Gorai.001G234300 5.0kb downstream 5.0kb downstream 6065 true Chr01: 47177363-47183427 Gossypium raimondii
Gorai.001G234300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47178428-47183427 Gossypium raimondii
Gorai.001G234300 10.0kb upstream 10.0kb upstream 11065 true Chr01: 47167363-47178427 Gossypium raimondii
Gorai.001G234300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47167363-47177362 Gossypium raimondii
Gorai.001G234300 10.0kb downstream 10.0kb downstream 11065 true Chr01: 47177363-47188427 Gossypium raimondii
Gorai.001G234300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47178428-47188427 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123804352 5264 Brassicales-Malvales Singleton cluster - no MSA
124301384 5266 SBM Singleton cluster - no MSA
124254444 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain