Gene : Gorai.004G137800 G. raimondii v2.1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  1378
Name:  ? Gorai.004G137800 Secondary Identifier:  ? PAC:26774308
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-7560 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.004G137800 0.5kb upstream 0.5kb upstream 3562 true Chr04: 38497138-38500699 Gossypium raimondii
Gorai.004G137800 0.5kb upstream 0.5kb upstream 500 false Chr04: 38497138-38497637 Gossypium raimondii
Gorai.004G137800 0.5kb downstream 0.5kb downstream 3562 true Chr04: 38497638-38501199 Gossypium raimondii
Gorai.004G137800 0.5kb downstream 0.5kb downstream 500 false Chr04: 38500700-38501199 Gossypium raimondii
Gorai.004G137800 1.0kb upstream 1.0kb upstream 4062 true Chr04: 38496638-38500699 Gossypium raimondii
Gorai.004G137800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 38496638-38497637 Gossypium raimondii
Gorai.004G137800 1.0kb downstream 1.0kb downstream 4062 true Chr04: 38497638-38501699 Gossypium raimondii
Gorai.004G137800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 38500700-38501699 Gossypium raimondii
Gorai.004G137800 2.0kb upstream 2.0kb upstream 5062 true Chr04: 38495638-38500699 Gossypium raimondii
Gorai.004G137800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 38495638-38497637 Gossypium raimondii
Gorai.004G137800 2.0kb downstream 2.0kb downstream 5062 true Chr04: 38497638-38502699 Gossypium raimondii
Gorai.004G137800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 38500700-38502699 Gossypium raimondii
Gorai.004G137800 5.0kb upstream 5.0kb upstream 8062 true Chr04: 38492638-38500699 Gossypium raimondii
Gorai.004G137800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 38492638-38497637 Gossypium raimondii
Gorai.004G137800 5.0kb downstream 5.0kb downstream 8062 true Chr04: 38497638-38505699 Gossypium raimondii
Gorai.004G137800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 38500700-38505699 Gossypium raimondii
Gorai.004G137800 10.0kb upstream 10.0kb upstream 13062 true Chr04: 38487638-38500699 Gossypium raimondii
Gorai.004G137800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 38487638-38497637 Gossypium raimondii
Gorai.004G137800 10.0kb downstream 10.0kb downstream 13062 true Chr04: 38497638-38510699 Gossypium raimondii
Gorai.004G137800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 38500700-38510699 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain