Gene : Gorai.012G103900 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  1039
Name:  ? Gorai.012G103900 Secondary Identifier:  ? PAC:26825528
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.012G103900 0.5kb upstream 0.5kb upstream 1303 true Chr12: 23255945-23257247 Gossypium raimondii
Gorai.012G103900 0.5kb upstream 0.5kb upstream 500 false Chr12: 23256748-23257247 Gossypium raimondii
Gorai.012G103900 0.5kb downstream 0.5kb downstream 1303 true Chr12: 23255445-23256747 Gossypium raimondii
Gorai.012G103900 0.5kb downstream 0.5kb downstream 500 false Chr12: 23255445-23255944 Gossypium raimondii
Gorai.012G103900 1.0kb upstream 1.0kb upstream 1803 true Chr12: 23255945-23257747 Gossypium raimondii
Gorai.012G103900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 23256748-23257747 Gossypium raimondii
Gorai.012G103900 1.0kb downstream 1.0kb downstream 1803 true Chr12: 23254945-23256747 Gossypium raimondii
Gorai.012G103900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 23254945-23255944 Gossypium raimondii
Gorai.012G103900 2.0kb upstream 2.0kb upstream 2803 true Chr12: 23255945-23258747 Gossypium raimondii
Gorai.012G103900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 23256748-23258747 Gossypium raimondii
Gorai.012G103900 2.0kb downstream 2.0kb downstream 2803 true Chr12: 23253945-23256747 Gossypium raimondii
Gorai.012G103900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 23253945-23255944 Gossypium raimondii
Gorai.012G103900 5.0kb upstream 5.0kb upstream 5803 true Chr12: 23255945-23261747 Gossypium raimondii
Gorai.012G103900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 23256748-23261747 Gossypium raimondii
Gorai.012G103900 5.0kb downstream 5.0kb downstream 5803 true Chr12: 23250945-23256747 Gossypium raimondii
Gorai.012G103900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 23250945-23255944 Gossypium raimondii
Gorai.012G103900 10.0kb upstream 10.0kb upstream 10803 true Chr12: 23255945-23266747 Gossypium raimondii
Gorai.012G103900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 23256748-23266747 Gossypium raimondii
Gorai.012G103900 10.0kb downstream 10.0kb downstream 10803 true Chr12: 23245945-23256747 Gossypium raimondii
Gorai.012G103900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 23245945-23255944 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123813088 5264 Brassicales-Malvales Singleton cluster - no MSA
124309643 5266 SBM Singleton cluster - no MSA
124254176 5268 Malvidae View MSA
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain