Gene : Gorai.013G116200 G. raimondii v2.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE Genomic Order:  1162
Name:  ? Gorai.013G116200 Secondary Identifier:  ? PAC:26789378
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii ARO-PWY Gossypium raimondii pathologic  
Graimondii PWY-6163 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.013G116200 0.5kb upstream 0.5kb upstream 4738 true Chr13: 28807990-28812727 Gossypium raimondii
Gorai.013G116200 0.5kb upstream 0.5kb upstream 500 false Chr13: 28812228-28812727 Gossypium raimondii
Gorai.013G116200 0.5kb downstream 0.5kb downstream 4738 true Chr13: 28807490-28812227 Gossypium raimondii
Gorai.013G116200 0.5kb downstream 0.5kb downstream 500 false Chr13: 28807490-28807989 Gossypium raimondii
Gorai.013G116200 1.0kb upstream 1.0kb upstream 5238 true Chr13: 28807990-28813227 Gossypium raimondii
Gorai.013G116200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 28812228-28813227 Gossypium raimondii
Gorai.013G116200 1.0kb downstream 1.0kb downstream 5238 true Chr13: 28806990-28812227 Gossypium raimondii
Gorai.013G116200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 28806990-28807989 Gossypium raimondii
Gorai.013G116200 2.0kb upstream 2.0kb upstream 6238 true Chr13: 28807990-28814227 Gossypium raimondii
Gorai.013G116200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 28812228-28814227 Gossypium raimondii
Gorai.013G116200 2.0kb downstream 2.0kb downstream 6238 true Chr13: 28805990-28812227 Gossypium raimondii
Gorai.013G116200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 28805990-28807989 Gossypium raimondii
Gorai.013G116200 5.0kb upstream 5.0kb upstream 9238 true Chr13: 28807990-28817227 Gossypium raimondii
Gorai.013G116200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 28812228-28817227 Gossypium raimondii
Gorai.013G116200 5.0kb downstream 5.0kb downstream 9238 true Chr13: 28802990-28812227 Gossypium raimondii
Gorai.013G116200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 28802990-28807989 Gossypium raimondii
Gorai.013G116200 10.0kb upstream 10.0kb upstream 14238 true Chr13: 28807990-28822227 Gossypium raimondii
Gorai.013G116200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 28812228-28822227 Gossypium raimondii
Gorai.013G116200 10.0kb downstream 10.0kb downstream 14238 true Chr13: 28797990-28812227 Gossypium raimondii
Gorai.013G116200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 28797990-28807989 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
123826524 5264 Brassicales-Malvales View MSA
124348825 5266 SBM View MSA
124246373 5268 Malvidae View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain