Gene : Gorai.008G126600 G. raimondii v2.1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Genomic Order:  1266
Name:  ? Gorai.008G126600 Secondary Identifier:  ? PAC:26818206
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PHOTOALL-PWY Gossypium raimondii pathologic  
Graimondii PWY-101 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.008G126600 0.5kb upstream 0.5kb upstream 986 true Chr08: 36804710-36805695 Gossypium raimondii
Gorai.008G126600 0.5kb upstream 0.5kb upstream 500 false Chr08: 36804710-36805209 Gossypium raimondii
Gorai.008G126600 0.5kb downstream 0.5kb downstream 986 true Chr08: 36805210-36806195 Gossypium raimondii
Gorai.008G126600 0.5kb downstream 0.5kb downstream 500 false Chr08: 36805696-36806195 Gossypium raimondii
Gorai.008G126600 1.0kb upstream 1.0kb upstream 1486 true Chr08: 36804210-36805695 Gossypium raimondii
Gorai.008G126600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 36804210-36805209 Gossypium raimondii
Gorai.008G126600 1.0kb downstream 1.0kb downstream 1486 true Chr08: 36805210-36806695 Gossypium raimondii
Gorai.008G126600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 36805696-36806695 Gossypium raimondii
Gorai.008G126600 2.0kb upstream 2.0kb upstream 2486 true Chr08: 36803210-36805695 Gossypium raimondii
Gorai.008G126600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 36803210-36805209 Gossypium raimondii
Gorai.008G126600 2.0kb downstream 2.0kb downstream 2486 true Chr08: 36805210-36807695 Gossypium raimondii
Gorai.008G126600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 36805696-36807695 Gossypium raimondii
Gorai.008G126600 5.0kb upstream 5.0kb upstream 5486 true Chr08: 36800210-36805695 Gossypium raimondii
Gorai.008G126600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 36800210-36805209 Gossypium raimondii
Gorai.008G126600 5.0kb downstream 5.0kb downstream 5486 true Chr08: 36805210-36810695 Gossypium raimondii
Gorai.008G126600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 36805696-36810695 Gossypium raimondii
Gorai.008G126600 10.0kb upstream 10.0kb upstream 10486 true Chr08: 36795210-36805695 Gossypium raimondii
Gorai.008G126600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 36795210-36805209 Gossypium raimondii
Gorai.008G126600 10.0kb downstream 10.0kb downstream 10486 true Chr08: 36805210-36815695 Gossypium raimondii
Gorai.008G126600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 36805696-36815695 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123810150 5264 Brassicales-Malvales Singleton cluster - no MSA
124306867 5266 SBM Singleton cluster - no MSA
124156955 5268 Malvidae Singleton cluster - no MSA
123881542 5270 Rosid Singleton cluster - no MSA
123751275 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain