Gene : Gorai.008G136700 G. raimondii v2.1
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1367
Name:  ? Gorai.008G136700 Secondary Identifier:  ? PAC:26813166
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-1081 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.008G136700 0.5kb upstream 0.5kb upstream 2820 true Chr08: 38591324-38594143 Gossypium raimondii
Gorai.008G136700 0.5kb upstream 0.5kb upstream 500 false Chr08: 38591324-38591823 Gossypium raimondii
Gorai.008G136700 0.5kb downstream 0.5kb downstream 2820 true Chr08: 38591824-38594643 Gossypium raimondii
Gorai.008G136700 0.5kb downstream 0.5kb downstream 500 false Chr08: 38594144-38594643 Gossypium raimondii
Gorai.008G136700 1.0kb upstream 1.0kb upstream 3320 true Chr08: 38590824-38594143 Gossypium raimondii
Gorai.008G136700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 38590824-38591823 Gossypium raimondii
Gorai.008G136700 1.0kb downstream 1.0kb downstream 3320 true Chr08: 38591824-38595143 Gossypium raimondii
Gorai.008G136700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 38594144-38595143 Gossypium raimondii
Gorai.008G136700 2.0kb upstream 2.0kb upstream 4320 true Chr08: 38589824-38594143 Gossypium raimondii
Gorai.008G136700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 38589824-38591823 Gossypium raimondii
Gorai.008G136700 2.0kb downstream 2.0kb downstream 4320 true Chr08: 38591824-38596143 Gossypium raimondii
Gorai.008G136700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 38594144-38596143 Gossypium raimondii
Gorai.008G136700 5.0kb upstream 5.0kb upstream 7320 true Chr08: 38586824-38594143 Gossypium raimondii
Gorai.008G136700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 38586824-38591823 Gossypium raimondii
Gorai.008G136700 5.0kb downstream 5.0kb downstream 7320 true Chr08: 38591824-38599143 Gossypium raimondii
Gorai.008G136700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 38594144-38599143 Gossypium raimondii
Gorai.008G136700 10.0kb upstream 10.0kb upstream 12320 true Chr08: 38581824-38594143 Gossypium raimondii
Gorai.008G136700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 38581824-38591823 Gossypium raimondii
Gorai.008G136700 10.0kb downstream 10.0kb downstream 12320 true Chr08: 38591824-38604143 Gossypium raimondii
Gorai.008G136700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 38594144-38604143 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain