Gene : Gorai.005G247700 G. raimondii v2.1
Defline:  (1 of 2) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  2477
Name:  ? Gorai.005G247700 Secondary Identifier:  ? PAC:26805545
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Graimondii PWY-2541 Gossypium raimondii pathologic  
Graimondii PWY-5670 Gossypium raimondii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Gorai.005G247700 0.5kb upstream 0.5kb upstream 6219 true Chr05: 62754908-62761126 Gossypium raimondii
Gorai.005G247700 0.5kb upstream 0.5kb upstream 500 false Chr05: 62754908-62755407 Gossypium raimondii
Gorai.005G247700 0.5kb downstream 0.5kb downstream 6219 true Chr05: 62755408-62761626 Gossypium raimondii
Gorai.005G247700 0.5kb downstream 0.5kb downstream 500 false Chr05: 62761127-62761626 Gossypium raimondii
Gorai.005G247700 1.0kb upstream 1.0kb upstream 6719 true Chr05: 62754408-62761126 Gossypium raimondii
Gorai.005G247700 1.0kb upstream 1.0kb upstream 1000 false Chr05: 62754408-62755407 Gossypium raimondii
Gorai.005G247700 1.0kb downstream 1.0kb downstream 6719 true Chr05: 62755408-62762126 Gossypium raimondii
Gorai.005G247700 1.0kb downstream 1.0kb downstream 1000 false Chr05: 62761127-62762126 Gossypium raimondii
Gorai.005G247700 2.0kb upstream 2.0kb upstream 7719 true Chr05: 62753408-62761126 Gossypium raimondii
Gorai.005G247700 2.0kb upstream 2.0kb upstream 2000 false Chr05: 62753408-62755407 Gossypium raimondii
Gorai.005G247700 2.0kb downstream 2.0kb downstream 7719 true Chr05: 62755408-62763126 Gossypium raimondii
Gorai.005G247700 2.0kb downstream 2.0kb downstream 2000 false Chr05: 62761127-62763126 Gossypium raimondii
Gorai.005G247700 5.0kb upstream 5.0kb upstream 10719 true Chr05: 62750408-62761126 Gossypium raimondii
Gorai.005G247700 5.0kb upstream 5.0kb upstream 5000 false Chr05: 62750408-62755407 Gossypium raimondii
Gorai.005G247700 5.0kb downstream 5.0kb downstream 10719 true Chr05: 62755408-62766126 Gossypium raimondii
Gorai.005G247700 5.0kb downstream 5.0kb downstream 5000 false Chr05: 62761127-62766126 Gossypium raimondii
Gorai.005G247700 10.0kb upstream 10.0kb upstream 15719 true Chr05: 62745408-62761126 Gossypium raimondii
Gorai.005G247700 10.0kb upstream 10.0kb upstream 10000 false Chr05: 62745408-62755407 Gossypium raimondii
Gorai.005G247700 10.0kb downstream 10.0kb downstream 15719 true Chr05: 62755408-62771126 Gossypium raimondii
Gorai.005G247700 10.0kb downstream 10.0kb downstream 10000 false Chr05: 62761127-62771126 Gossypium raimondii

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827932 5264 Brassicales-Malvales View MSA
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain