Protein Domain : IPR016139

Type:  Domain Name:  Ribosome-inactivating protein, subdomain 2
Description:  A number of bacterial and plant toxins act by inhibiting protein synthesis in eukaryotic cells. The toxins of the shiga and ricin family inactivate 60S ribosomal subunits by an N-glycosidic cleavage which releases a specific adenine base from the sugar-phosphate backbone of 28S rRNA [, , ]. Members of the family include shiga and shiga-like toxins, and type I (e.g. trichosanthin and luffin) and type II (e.g. ricin, agglutinin and abrin) ribosome inactivating proteins (RIPs). All these toxins are structurally related. RIPs have been of considerable interest because of their potential use, conjugated with monoclonal antibodies, as immunotoxins to treat cancers. Further, trichosanthin has been shown to have potent activity against HIV-1-infected T cells and macrophages []. Elucidation of the structure-function relationships of RIPs has therefore become a major research effort. It is now known that RIPs are structurally related. A conserved glutamic residue has been implicated in the catalytic mechanism []; this lies near a conserved arginine, which also plays a role in catalysis [].This entry contains proteins with a subdomain with an irregular topology. Short Name:  Ribosome_inactivat_prot_sub2

0 Child Features

0 Contains

1 Cross References

Identifier
G3DSA:4.10.470.10

1 Found In

DB identifier Type Name
IPR001574 Family Ribosome-inactivating protein

2 GO Annotations

GO Term Gene Name
GO:0030598 IPR016139
GO:0017148 IPR016139

2 Ontology Annotations

GO Term Gene Name
GO:0030598 IPR016139
GO:0017148 IPR016139

0 Parent Features

721 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.TU.contig_31024.2 PAC:16429918 Carica papaya 63  
evm.TU.contig_34583.1 PAC:16430477 Carica papaya 63  
evm.model.supercontig_105.7 PAC:16405135 Carica papaya 126  
evm.model.supercontig_1441.2 PAC:16409058 Carica papaya 96  
evm.model.supercontig_221.3 PAC:16413963 Carica papaya 194  
29852.m001982 B9RKZ9 PAC:16811544 Ricinus communis 301  
29942.m000748 B9S6M3 PAC:16814307 Ricinus communis 300  
30113.m001449 B9RRJ1 PAC:16817922 Ricinus communis 306  
60638.m00022 B9T1S1 PAC:16829381 Ricinus communis 303  
60638.m00025 B9T1R9 PAC:16829383 Ricinus communis 346  
29638.m000512 B9STV4 PAC:16804430 Ricinus communis 271  
29638.m000513 B9STV5 PAC:16804431 Ricinus communis 270  
28842.m000952 B9SBQ1 PAC:16801840 Ricinus communis 281  
orange1.1g040193m A0A067G613 PAC:18117936 Citrus sinensis 80  
orange1.1g001183m A0A067FQX3 PAC:18132307 Citrus sinensis 1131  
AT4G00540.2 F4JHD4 PAC:19644225 Arabidopsis thaliana 405  
AT5G60210.2 Q9LSS5 PAC:19670834 Arabidopsis thaliana 564  
AT5G60210.1 Q9LSS5 PAC:19670833 Arabidopsis thaliana 564  
AT1G59500.1 Q9LQ68 PAC:19655856 Arabidopsis thaliana 597  
Lus10000988 PAC:23162252 Linum usitatissimum 360  
Potri.009G037000.7 PAC:26987436 Populus trichocarpa 383  
Potri.009G037000.1 A0A2K1Z293 PAC:26987435 Populus trichocarpa 513  
Gorai.013G215100.2 A0A0D2U4W7 PAC:26787679 Gossypium raimondii 164  
Gorai.013G215100.1 A0A0D2U4W7 PAC:26787678 Gossypium raimondii 164  
Gorai.008G040600.4 A0A0D2SZZ0 PAC:26819006 Gossypium raimondii 370  
Gorai.008G040600.2 A0A0D2SZZ0 PAC:26819005 Gossypium raimondii 370  
Gorai.005G258600.1 A0A0D2SNH8 PAC:26802441 Gossypium raimondii 487  
Gorai.005G258600.2 A0A0D2RTB9 PAC:26802442 Gossypium raimondii 377  
Thecc1EG006517t1 A0A061DYM7 PAC:27461015 Theobroma cacao 257  
Thecc1EG012022t1 A0A061FV06 PAC:27448366 Theobroma cacao 1149  

6 Publications

First Author Title Year Journal Volume Pages PubMed ID
            1742358
            2714255
            3276522
            8411176
            3357883
            8066085