Gene : AL1G40220 A. lyrata v2.1

Defline:  (1 of 4) K00588 - caffeoyl-CoA O-methyltransferase (E2.1.1.104) Genomic Order:  2857
Name:  ? AL1G40220 Secondary Identifier:  ? PAC:35935085

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1121 Arabidopsis lyrata pathologic  
Alyrata PWY-361 Arabidopsis lyrata pathologic  
Alyrata PWY-6039 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G40220 0.5kb upstream 0.5kb upstream 2025   true scaffold_1: 11746824-11748848 Arabidopsis lyrata
AL1G40220 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 11748349-11748848 Arabidopsis lyrata
AL1G40220 0.5kb downstream 0.5kb downstream 2025   true scaffold_1: 11746324-11748348 Arabidopsis lyrata
AL1G40220 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 11746324-11746823 Arabidopsis lyrata
AL1G40220 1.0kb upstream 1.0kb upstream 2525   true scaffold_1: 11746824-11749348 Arabidopsis lyrata
AL1G40220 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 11748349-11749348 Arabidopsis lyrata
AL1G40220 1.0kb downstream 1.0kb downstream 2525   true scaffold_1: 11745824-11748348 Arabidopsis lyrata
AL1G40220 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 11745824-11746823 Arabidopsis lyrata
AL1G40220 2.0kb upstream 2.0kb upstream 3525   true scaffold_1: 11746824-11750348 Arabidopsis lyrata
AL1G40220 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 11748349-11750348 Arabidopsis lyrata
AL1G40220 2.0kb downstream 2.0kb downstream 3525   true scaffold_1: 11744824-11748348 Arabidopsis lyrata
AL1G40220 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 11744824-11746823 Arabidopsis lyrata
AL1G40220 5.0kb upstream 5.0kb upstream 6525   true scaffold_1: 11746824-11753348 Arabidopsis lyrata
AL1G40220 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 11748349-11753348 Arabidopsis lyrata
AL1G40220 5.0kb downstream 5.0kb downstream 6525   true scaffold_1: 11741824-11748348 Arabidopsis lyrata
AL1G40220 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 11741824-11746823 Arabidopsis lyrata
AL1G40220 10.0kb upstream 10.0kb upstream 11525   true scaffold_1: 11746824-11758348 Arabidopsis lyrata
AL1G40220 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 11748349-11758348 Arabidopsis lyrata
AL1G40220 10.0kb downstream 10.0kb downstream 11525   true scaffold_1: 11736824-11748348 Arabidopsis lyrata
AL1G40220 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 11736824-11746823 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779201 5273 Angiosperm View MSA
122360483 5261 Brassicaceae View MSA
123838295 5264 Brassicales-Malvales View MSA
124322431 5266 SBM View MSA
124247989 5268 Malvidae View MSA
124066642 5270 Rosid View MSA
123738230 5271 Pentapetalae View MSA
122769915 5272 Eudicot View MSA
121050882 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain