Gene : AL1G44000 A. lyrata v2.1

Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  3185
Name:  ? AL1G44000 Secondary Identifier:  ? PAC:35931560

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-695 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G44000 0.5kb upstream 0.5kb upstream 2511   true scaffold_1: 13326063-13328573 Arabidopsis lyrata
AL1G44000 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 13326063-13326562 Arabidopsis lyrata
AL1G44000 0.5kb downstream 0.5kb downstream 2511   true scaffold_1: 13326563-13329073 Arabidopsis lyrata
AL1G44000 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 13328574-13329073 Arabidopsis lyrata
AL1G44000 1.0kb upstream 1.0kb upstream 3011   true scaffold_1: 13325563-13328573 Arabidopsis lyrata
AL1G44000 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 13325563-13326562 Arabidopsis lyrata
AL1G44000 1.0kb downstream 1.0kb downstream 3011   true scaffold_1: 13326563-13329573 Arabidopsis lyrata
AL1G44000 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 13328574-13329573 Arabidopsis lyrata
AL1G44000 2.0kb upstream 2.0kb upstream 4011   true scaffold_1: 13324563-13328573 Arabidopsis lyrata
AL1G44000 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 13324563-13326562 Arabidopsis lyrata
AL1G44000 2.0kb downstream 2.0kb downstream 4011   true scaffold_1: 13326563-13330573 Arabidopsis lyrata
AL1G44000 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 13328574-13330573 Arabidopsis lyrata
AL1G44000 5.0kb upstream 5.0kb upstream 7011   true scaffold_1: 13321563-13328573 Arabidopsis lyrata
AL1G44000 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 13321563-13326562 Arabidopsis lyrata
AL1G44000 5.0kb downstream 5.0kb downstream 7011   true scaffold_1: 13326563-13333573 Arabidopsis lyrata
AL1G44000 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 13328574-13333573 Arabidopsis lyrata
AL1G44000 10.0kb upstream 10.0kb upstream 12011   true scaffold_1: 13316563-13328573 Arabidopsis lyrata
AL1G44000 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 13316563-13326562 Arabidopsis lyrata
AL1G44000 10.0kb downstream 10.0kb downstream 12011   true scaffold_1: 13326563-13338573 Arabidopsis lyrata
AL1G44000 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 13328574-13338573 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372061 5261 Brassicaceae View MSA
123836894 5264 Brassicales-Malvales View MSA
124346886 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain