Gene : AL1G51430 A. lyrata v2.1

Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  3832
Name:  ? AL1G51430 Secondary Identifier:  ? PAC:35932042

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata CALVIN-PWY Arabidopsis lyrata pathologic  
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G51430 0.5kb upstream 0.5kb upstream 3147   true scaffold_1: 21672318-21675464 Arabidopsis lyrata
AL1G51430 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 21672318-21672817 Arabidopsis lyrata
AL1G51430 0.5kb downstream 0.5kb downstream 3147   true scaffold_1: 21672818-21675964 Arabidopsis lyrata
AL1G51430 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 21675465-21675964 Arabidopsis lyrata
AL1G51430 1.0kb upstream 1.0kb upstream 3647   true scaffold_1: 21671818-21675464 Arabidopsis lyrata
AL1G51430 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 21671818-21672817 Arabidopsis lyrata
AL1G51430 1.0kb downstream 1.0kb downstream 3647   true scaffold_1: 21672818-21676464 Arabidopsis lyrata
AL1G51430 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 21675465-21676464 Arabidopsis lyrata
AL1G51430 2.0kb upstream 2.0kb upstream 4647   true scaffold_1: 21670818-21675464 Arabidopsis lyrata
AL1G51430 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 21670818-21672817 Arabidopsis lyrata
AL1G51430 2.0kb downstream 2.0kb downstream 4647   true scaffold_1: 21672818-21677464 Arabidopsis lyrata
AL1G51430 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 21675465-21677464 Arabidopsis lyrata
AL1G51430 5.0kb upstream 5.0kb upstream 7647   true scaffold_1: 21667818-21675464 Arabidopsis lyrata
AL1G51430 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 21667818-21672817 Arabidopsis lyrata
AL1G51430 5.0kb downstream 5.0kb downstream 7647   true scaffold_1: 21672818-21680464 Arabidopsis lyrata
AL1G51430 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 21675465-21680464 Arabidopsis lyrata
AL1G51430 10.0kb upstream 10.0kb upstream 12647   true scaffold_1: 21662818-21675464 Arabidopsis lyrata
AL1G51430 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 21662818-21672817 Arabidopsis lyrata
AL1G51430 10.0kb downstream 10.0kb downstream 12647   true scaffold_1: 21672818-21685464 Arabidopsis lyrata
AL1G51430 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 21675465-21685464 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369088 5261 Brassicaceae View MSA
123835390 5264 Brassicales-Malvales View MSA
124344807 5266 SBM View MSA
124241337 5268 Malvidae View MSA
124062072 5270 Rosid View MSA
123746514 5271 Pentapetalae View MSA
122796484 5272 Eudicot View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain