Gene : AL1G62540 A. lyrata v2.1

Defline:  (1 of 2) PTHR31707:SF55 - PECTINESTERASE 2-RELATED Genomic Order:  4811
Name:  ? AL1G62540 Secondary Identifier:  ? PAC:35933835

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G62540 0.5kb upstream 0.5kb upstream 3534   true scaffold_1: 28822404-28825937 Arabidopsis lyrata
AL1G62540 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 28822404-28822903 Arabidopsis lyrata
AL1G62540 0.5kb downstream 0.5kb downstream 3534   true scaffold_1: 28822904-28826437 Arabidopsis lyrata
AL1G62540 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 28825938-28826437 Arabidopsis lyrata
AL1G62540 1.0kb upstream 1.0kb upstream 4034   true scaffold_1: 28821904-28825937 Arabidopsis lyrata
AL1G62540 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 28821904-28822903 Arabidopsis lyrata
AL1G62540 1.0kb downstream 1.0kb downstream 4034   true scaffold_1: 28822904-28826937 Arabidopsis lyrata
AL1G62540 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 28825938-28826937 Arabidopsis lyrata
AL1G62540 2.0kb upstream 2.0kb upstream 5034   true scaffold_1: 28820904-28825937 Arabidopsis lyrata
AL1G62540 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 28820904-28822903 Arabidopsis lyrata
AL1G62540 2.0kb downstream 2.0kb downstream 5034   true scaffold_1: 28822904-28827937 Arabidopsis lyrata
AL1G62540 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 28825938-28827937 Arabidopsis lyrata
AL1G62540 5.0kb upstream 5.0kb upstream 8034   true scaffold_1: 28817904-28825937 Arabidopsis lyrata
AL1G62540 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 28817904-28822903 Arabidopsis lyrata
AL1G62540 5.0kb downstream 5.0kb downstream 8034   true scaffold_1: 28822904-28830937 Arabidopsis lyrata
AL1G62540 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 28825938-28830937 Arabidopsis lyrata
AL1G62540 10.0kb upstream 10.0kb upstream 13034   true scaffold_1: 28812904-28825937 Arabidopsis lyrata
AL1G62540 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 28812904-28822903 Arabidopsis lyrata
AL1G62540 10.0kb downstream 10.0kb downstream 13034   true scaffold_1: 28822904-28835937 Arabidopsis lyrata
AL1G62540 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 28825938-28835937 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365332 5261 Brassicaceae View MSA
123841223 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain