Gene : AL1G64610 A. lyrata v2.1

Defline:  (1 of 2) K13065 - shikimate O-hydroxycinnamoyltransferase (E2.3.1.133, HCT) Genomic Order:  5007
Name:  ? AL1G64610 Secondary Identifier:  ? PAC:35932505

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-361 Arabidopsis lyrata pathologic  
Alyrata PWY-6039 Arabidopsis lyrata pathologic  
Alyrata PWY-6040 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G64610 0.5kb upstream 0.5kb upstream 2435   true scaffold_1: 29802274-29804708 Arabidopsis lyrata
AL1G64610 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 29804209-29804708 Arabidopsis lyrata
AL1G64610 0.5kb downstream 0.5kb downstream 2435   true scaffold_1: 29801774-29804208 Arabidopsis lyrata
AL1G64610 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 29801774-29802273 Arabidopsis lyrata
AL1G64610 1.0kb upstream 1.0kb upstream 2935   true scaffold_1: 29802274-29805208 Arabidopsis lyrata
AL1G64610 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 29804209-29805208 Arabidopsis lyrata
AL1G64610 1.0kb downstream 1.0kb downstream 2935   true scaffold_1: 29801274-29804208 Arabidopsis lyrata
AL1G64610 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 29801274-29802273 Arabidopsis lyrata
AL1G64610 2.0kb upstream 2.0kb upstream 3935   true scaffold_1: 29802274-29806208 Arabidopsis lyrata
AL1G64610 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 29804209-29806208 Arabidopsis lyrata
AL1G64610 2.0kb downstream 2.0kb downstream 3935   true scaffold_1: 29800274-29804208 Arabidopsis lyrata
AL1G64610 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 29800274-29802273 Arabidopsis lyrata
AL1G64610 5.0kb upstream 5.0kb upstream 6935   true scaffold_1: 29802274-29809208 Arabidopsis lyrata
AL1G64610 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 29804209-29809208 Arabidopsis lyrata
AL1G64610 5.0kb downstream 5.0kb downstream 6935   true scaffold_1: 29797274-29804208 Arabidopsis lyrata
AL1G64610 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 29797274-29802273 Arabidopsis lyrata
AL1G64610 10.0kb upstream 10.0kb upstream 11935   true scaffold_1: 29802274-29814208 Arabidopsis lyrata
AL1G64610 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 29804209-29814208 Arabidopsis lyrata
AL1G64610 10.0kb downstream 10.0kb downstream 11935   true scaffold_1: 29792274-29804208 Arabidopsis lyrata
AL1G64610 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 29792274-29802273 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364979 5261 Brassicaceae View MSA
123837697 5264 Brassicales-Malvales View MSA
124343720 5266 SBM View MSA
124250027 5268 Malvidae View MSA
124074856 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain