Gene : AL2G22140 A. lyrata v2.1

Defline:  (1 of 1) PTHR31642:SF40 - DUAL TRANSCRIPTION UNIT AND ALTERNATIVE SPLICING PROTEIN GLAUCE Genomic Order:  1036
Name:  ? AL2G22140 Secondary Identifier:  ? PAC:35945332

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7120 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G22140 0.5kb upstream 0.5kb upstream 4745   true scaffold_2: 9463095-9467839 Arabidopsis lyrata
AL2G22140 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 9463095-9463594 Arabidopsis lyrata
AL2G22140 0.5kb downstream 0.5kb downstream 4745   true scaffold_2: 9463595-9468339 Arabidopsis lyrata
AL2G22140 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 9467840-9468339 Arabidopsis lyrata
AL2G22140 1.0kb upstream 1.0kb upstream 5245   true scaffold_2: 9462595-9467839 Arabidopsis lyrata
AL2G22140 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 9462595-9463594 Arabidopsis lyrata
AL2G22140 1.0kb downstream 1.0kb downstream 5245   true scaffold_2: 9463595-9468839 Arabidopsis lyrata
AL2G22140 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 9467840-9468839 Arabidopsis lyrata
AL2G22140 2.0kb upstream 2.0kb upstream 6245   true scaffold_2: 9461595-9467839 Arabidopsis lyrata
AL2G22140 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 9461595-9463594 Arabidopsis lyrata
AL2G22140 2.0kb downstream 2.0kb downstream 6245   true scaffold_2: 9463595-9469839 Arabidopsis lyrata
AL2G22140 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 9467840-9469839 Arabidopsis lyrata
AL2G22140 5.0kb upstream 5.0kb upstream 9245   true scaffold_2: 9458595-9467839 Arabidopsis lyrata
AL2G22140 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 9458595-9463594 Arabidopsis lyrata
AL2G22140 5.0kb downstream 5.0kb downstream 9245   true scaffold_2: 9463595-9472839 Arabidopsis lyrata
AL2G22140 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 9467840-9472839 Arabidopsis lyrata
AL2G22140 10.0kb upstream 10.0kb upstream 14245   true scaffold_2: 9453595-9467839 Arabidopsis lyrata
AL2G22140 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 9453595-9463594 Arabidopsis lyrata
AL2G22140 10.0kb downstream 10.0kb downstream 14245   true scaffold_2: 9463595-9477839 Arabidopsis lyrata
AL2G22140 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 9467840-9477839 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369907 5261 Brassicaceae View MSA
123827879 5264 Brassicales-Malvales View MSA
124345687 5266 SBM View MSA
124243245 5268 Malvidae View MSA
124063642 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain