Gene : AL2G23800 A. lyrata v2.1

Defline:  (1 of 8) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  1171
Name:  ? AL2G23800 Secondary Identifier:  ? PAC:35944510

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G23800 0.5kb upstream 0.5kb upstream 1985   true scaffold_2: 10781116-10783100 Arabidopsis lyrata
AL2G23800 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 10781116-10781615 Arabidopsis lyrata
AL2G23800 0.5kb downstream 0.5kb downstream 1985   true scaffold_2: 10781616-10783600 Arabidopsis lyrata
AL2G23800 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 10783101-10783600 Arabidopsis lyrata
AL2G23800 1.0kb upstream 1.0kb upstream 2485   true scaffold_2: 10780616-10783100 Arabidopsis lyrata
AL2G23800 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 10780616-10781615 Arabidopsis lyrata
AL2G23800 1.0kb downstream 1.0kb downstream 2485   true scaffold_2: 10781616-10784100 Arabidopsis lyrata
AL2G23800 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 10783101-10784100 Arabidopsis lyrata
AL2G23800 2.0kb upstream 2.0kb upstream 3485   true scaffold_2: 10779616-10783100 Arabidopsis lyrata
AL2G23800 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 10779616-10781615 Arabidopsis lyrata
AL2G23800 2.0kb downstream 2.0kb downstream 3485   true scaffold_2: 10781616-10785100 Arabidopsis lyrata
AL2G23800 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 10783101-10785100 Arabidopsis lyrata
AL2G23800 5.0kb upstream 5.0kb upstream 6485   true scaffold_2: 10776616-10783100 Arabidopsis lyrata
AL2G23800 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 10776616-10781615 Arabidopsis lyrata
AL2G23800 5.0kb downstream 5.0kb downstream 6485   true scaffold_2: 10781616-10788100 Arabidopsis lyrata
AL2G23800 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 10783101-10788100 Arabidopsis lyrata
AL2G23800 10.0kb upstream 10.0kb upstream 11485   true scaffold_2: 10771616-10783100 Arabidopsis lyrata
AL2G23800 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 10771616-10781615 Arabidopsis lyrata
AL2G23800 10.0kb downstream 10.0kb downstream 11485   true scaffold_2: 10781616-10793100 Arabidopsis lyrata
AL2G23800 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 10783101-10793100 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367409 5261 Brassicaceae View MSA
123838287 5264 Brassicales-Malvales View MSA
124342273 5266 SBM View MSA
124246000 5268 Malvidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain