Gene : AL2G25270 A. lyrata v2.1

Defline:  (1 of 6) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  1303
Name:  ? AL2G25270 Secondary Identifier:  ? PAC:35944972

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7409 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G25270 0.5kb upstream 0.5kb upstream 4036   true scaffold_2: 12008932-12012967 Arabidopsis lyrata
AL2G25270 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 12012468-12012967 Arabidopsis lyrata
AL2G25270 0.5kb downstream 0.5kb downstream 4036   true scaffold_2: 12008432-12012467 Arabidopsis lyrata
AL2G25270 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 12008432-12008931 Arabidopsis lyrata
AL2G25270 1.0kb upstream 1.0kb upstream 4536   true scaffold_2: 12008932-12013467 Arabidopsis lyrata
AL2G25270 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 12012468-12013467 Arabidopsis lyrata
AL2G25270 1.0kb downstream 1.0kb downstream 4536   true scaffold_2: 12007932-12012467 Arabidopsis lyrata
AL2G25270 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 12007932-12008931 Arabidopsis lyrata
AL2G25270 2.0kb upstream 2.0kb upstream 5536   true scaffold_2: 12008932-12014467 Arabidopsis lyrata
AL2G25270 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 12012468-12014467 Arabidopsis lyrata
AL2G25270 2.0kb downstream 2.0kb downstream 5536   true scaffold_2: 12006932-12012467 Arabidopsis lyrata
AL2G25270 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 12006932-12008931 Arabidopsis lyrata
AL2G25270 5.0kb upstream 5.0kb upstream 8536   true scaffold_2: 12008932-12017467 Arabidopsis lyrata
AL2G25270 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 12012468-12017467 Arabidopsis lyrata
AL2G25270 5.0kb downstream 5.0kb downstream 8536   true scaffold_2: 12003932-12012467 Arabidopsis lyrata
AL2G25270 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 12003932-12008931 Arabidopsis lyrata
AL2G25270 10.0kb upstream 10.0kb upstream 13536   true scaffold_2: 12008932-12022467 Arabidopsis lyrata
AL2G25270 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 12012468-12022467 Arabidopsis lyrata
AL2G25270 10.0kb downstream 10.0kb downstream 13536   true scaffold_2: 11998932-12012467 Arabidopsis lyrata
AL2G25270 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 11998932-12008931 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343425 5261 Brassicaceae View MSA
123783631 5264 Brassicales-Malvales View MSA
124281852 5266 SBM View MSA
124245225 5268 Malvidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain