Gene : AL2G29870 A. lyrata v2.1

Defline:  (1 of 1) PTHR31375:SF29 - PECTIN LYASE-LIKE PROTEIN-RELATED Genomic Order:  1724
Name:  ? AL2G29870 Secondary Identifier:  ? PAC:35946532

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL2G29870 0.5kb upstream 0.5kb upstream 2636   true scaffold_2: 14450522-14453157 Arabidopsis lyrata
AL2G29870 0.5kb upstream 0.5kb upstream 500   false scaffold_2: 14452658-14453157 Arabidopsis lyrata
AL2G29870 0.5kb downstream 0.5kb downstream 2636   true scaffold_2: 14450022-14452657 Arabidopsis lyrata
AL2G29870 0.5kb downstream 0.5kb downstream 500   false scaffold_2: 14450022-14450521 Arabidopsis lyrata
AL2G29870 1.0kb upstream 1.0kb upstream 3136   true scaffold_2: 14450522-14453657 Arabidopsis lyrata
AL2G29870 1.0kb upstream 1.0kb upstream 1000   false scaffold_2: 14452658-14453657 Arabidopsis lyrata
AL2G29870 1.0kb downstream 1.0kb downstream 3136   true scaffold_2: 14449522-14452657 Arabidopsis lyrata
AL2G29870 1.0kb downstream 1.0kb downstream 1000   false scaffold_2: 14449522-14450521 Arabidopsis lyrata
AL2G29870 2.0kb upstream 2.0kb upstream 4136   true scaffold_2: 14450522-14454657 Arabidopsis lyrata
AL2G29870 2.0kb upstream 2.0kb upstream 2000   false scaffold_2: 14452658-14454657 Arabidopsis lyrata
AL2G29870 2.0kb downstream 2.0kb downstream 4136   true scaffold_2: 14448522-14452657 Arabidopsis lyrata
AL2G29870 2.0kb downstream 2.0kb downstream 2000   false scaffold_2: 14448522-14450521 Arabidopsis lyrata
AL2G29870 5.0kb upstream 5.0kb upstream 7136   true scaffold_2: 14450522-14457657 Arabidopsis lyrata
AL2G29870 5.0kb upstream 5.0kb upstream 5000   false scaffold_2: 14452658-14457657 Arabidopsis lyrata
AL2G29870 5.0kb downstream 5.0kb downstream 7136   true scaffold_2: 14445522-14452657 Arabidopsis lyrata
AL2G29870 5.0kb downstream 5.0kb downstream 5000   false scaffold_2: 14445522-14450521 Arabidopsis lyrata
AL2G29870 10.0kb upstream 10.0kb upstream 12136   true scaffold_2: 14450522-14462657 Arabidopsis lyrata
AL2G29870 10.0kb upstream 10.0kb upstream 10000   false scaffold_2: 14452658-14462657 Arabidopsis lyrata
AL2G29870 10.0kb downstream 10.0kb downstream 12136   true scaffold_2: 14440522-14452657 Arabidopsis lyrata
AL2G29870 10.0kb downstream 10.0kb downstream 10000   false scaffold_2: 14440522-14450521 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370843 5261 Brassicaceae View MSA
123841126 5264 Brassicales-Malvales View MSA
124345334 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain