Gene : AL3G11710 A. lyrata v2.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF18 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED Genomic Order:  163
Name:  ? AL3G11710 Secondary Identifier:  ? PAC:35940309
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G11710 0.5kb upstream 0.5kb upstream 3564   true scaffold_3: 593737-597300 Arabidopsis lyrata
AL3G11710 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 596801-597300 Arabidopsis lyrata
AL3G11710 0.5kb downstream 0.5kb downstream 3564   true scaffold_3: 593237-596800 Arabidopsis lyrata
AL3G11710 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 593237-593736 Arabidopsis lyrata
AL3G11710 1.0kb upstream 1.0kb upstream 4064   true scaffold_3: 593737-597800 Arabidopsis lyrata
AL3G11710 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 596801-597800 Arabidopsis lyrata
AL3G11710 1.0kb downstream 1.0kb downstream 4064   true scaffold_3: 592737-596800 Arabidopsis lyrata
AL3G11710 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 592737-593736 Arabidopsis lyrata
AL3G11710 2.0kb upstream 2.0kb upstream 5064   true scaffold_3: 593737-598800 Arabidopsis lyrata
AL3G11710 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 596801-598800 Arabidopsis lyrata
AL3G11710 2.0kb downstream 2.0kb downstream 5064   true scaffold_3: 591737-596800 Arabidopsis lyrata
AL3G11710 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 591737-593736 Arabidopsis lyrata
AL3G11710 5.0kb upstream 5.0kb upstream 8064   true scaffold_3: 593737-601800 Arabidopsis lyrata
AL3G11710 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 596801-601800 Arabidopsis lyrata
AL3G11710 5.0kb downstream 5.0kb downstream 8064   true scaffold_3: 588737-596800 Arabidopsis lyrata
AL3G11710 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 588737-593736 Arabidopsis lyrata
AL3G11710 10.0kb upstream 10.0kb upstream 13064   true scaffold_3: 593737-606800 Arabidopsis lyrata
AL3G11710 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 596801-606800 Arabidopsis lyrata
AL3G11710 10.0kb downstream 10.0kb downstream 13064   true scaffold_3: 583737-596800 Arabidopsis lyrata
AL3G11710 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 583737-593736 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370838 5261 Brassicaceae View MSA
123839319 5264 Brassicales-Malvales View MSA
124346578 5266 SBM View MSA
124247755 5268 Malvidae View MSA
124065263 5270 Rosid View MSA
123736943 5271 Pentapetalae View MSA
122785665 5272 Eudicot View MSA
122046623 5273 Angiosperm View MSA
121350815 5274 Embryophyte View MSA
123425961 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain