Gene : AL3G19350 A. lyrata v2.1

Defline:  (1 of 1) PTHR31375:SF28 - POLYGALACTURONASE QRT2 Genomic Order:  889
Name:  ? AL3G19350 Secondary Identifier:  ? PAC:35940304

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G19350 0.5kb upstream 0.5kb upstream 3249   true scaffold_3: 3324244-3327492 Arabidopsis lyrata
AL3G19350 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 3324244-3324743 Arabidopsis lyrata
AL3G19350 0.5kb downstream 0.5kb downstream 3249   true scaffold_3: 3324744-3327992 Arabidopsis lyrata
AL3G19350 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 3327493-3327992 Arabidopsis lyrata
AL3G19350 1.0kb upstream 1.0kb upstream 3749   true scaffold_3: 3323744-3327492 Arabidopsis lyrata
AL3G19350 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 3323744-3324743 Arabidopsis lyrata
AL3G19350 1.0kb downstream 1.0kb downstream 3749   true scaffold_3: 3324744-3328492 Arabidopsis lyrata
AL3G19350 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 3327493-3328492 Arabidopsis lyrata
AL3G19350 2.0kb upstream 2.0kb upstream 4749   true scaffold_3: 3322744-3327492 Arabidopsis lyrata
AL3G19350 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 3322744-3324743 Arabidopsis lyrata
AL3G19350 2.0kb downstream 2.0kb downstream 4749   true scaffold_3: 3324744-3329492 Arabidopsis lyrata
AL3G19350 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 3327493-3329492 Arabidopsis lyrata
AL3G19350 5.0kb upstream 5.0kb upstream 7749   true scaffold_3: 3319744-3327492 Arabidopsis lyrata
AL3G19350 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 3319744-3324743 Arabidopsis lyrata
AL3G19350 5.0kb downstream 5.0kb downstream 7749   true scaffold_3: 3324744-3332492 Arabidopsis lyrata
AL3G19350 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 3327493-3332492 Arabidopsis lyrata
AL3G19350 10.0kb upstream 10.0kb upstream 12749   true scaffold_3: 3314744-3327492 Arabidopsis lyrata
AL3G19350 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 3314744-3324743 Arabidopsis lyrata
AL3G19350 10.0kb downstream 10.0kb downstream 12749   true scaffold_3: 3324744-3337492 Arabidopsis lyrata
AL3G19350 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 3327493-3337492 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369807 5261 Brassicaceae View MSA
123839826 5264 Brassicales-Malvales View MSA
124338536 5266 SBM View MSA
124237828 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain