Gene : AL3G23400 A. lyrata v2.1

Defline:  (1 of 1) PTHR22849//PTHR22849:SF24 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1271
Name:  ? AL3G23400 Secondary Identifier:  ? PAC:35944146

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G23400 0.5kb upstream 0.5kb upstream 2349   true scaffold_3: 4732730-4735078 Arabidopsis lyrata
AL3G23400 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 4734579-4735078 Arabidopsis lyrata
AL3G23400 0.5kb downstream 0.5kb downstream 2349   true scaffold_3: 4732230-4734578 Arabidopsis lyrata
AL3G23400 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 4732230-4732729 Arabidopsis lyrata
AL3G23400 1.0kb upstream 1.0kb upstream 2849   true scaffold_3: 4732730-4735578 Arabidopsis lyrata
AL3G23400 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 4734579-4735578 Arabidopsis lyrata
AL3G23400 1.0kb downstream 1.0kb downstream 2849   true scaffold_3: 4731730-4734578 Arabidopsis lyrata
AL3G23400 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 4731730-4732729 Arabidopsis lyrata
AL3G23400 2.0kb upstream 2.0kb upstream 3849   true scaffold_3: 4732730-4736578 Arabidopsis lyrata
AL3G23400 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 4734579-4736578 Arabidopsis lyrata
AL3G23400 2.0kb downstream 2.0kb downstream 3849   true scaffold_3: 4730730-4734578 Arabidopsis lyrata
AL3G23400 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 4730730-4732729 Arabidopsis lyrata
AL3G23400 5.0kb upstream 5.0kb upstream 6849   true scaffold_3: 4732730-4739578 Arabidopsis lyrata
AL3G23400 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 4734579-4739578 Arabidopsis lyrata
AL3G23400 5.0kb downstream 5.0kb downstream 6849   true scaffold_3: 4727730-4734578 Arabidopsis lyrata
AL3G23400 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 4727730-4732729 Arabidopsis lyrata
AL3G23400 10.0kb upstream 10.0kb upstream 11849   true scaffold_3: 4732730-4744578 Arabidopsis lyrata
AL3G23400 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 4734579-4744578 Arabidopsis lyrata
AL3G23400 10.0kb downstream 10.0kb downstream 11849   true scaffold_3: 4722730-4734578 Arabidopsis lyrata
AL3G23400 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 4722730-4732729 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364375 5261 Brassicaceae View MSA
123839654 5264 Brassicales-Malvales View MSA
124345948 5266 SBM View MSA
124251997 5268 Malvidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain