Gene : AL3G25720 A. lyrata v2.1

Defline:  (1 of 1) PTHR10742:SF210 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 Genomic Order:  1493
Name:  ? AL3G25720 Secondary Identifier:  ? PAC:35942095

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6441 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G25720 0.5kb upstream 0.5kb upstream 3376   true scaffold_3: 5591149-5594524 Arabidopsis lyrata
AL3G25720 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 5594025-5594524 Arabidopsis lyrata
AL3G25720 0.5kb downstream 0.5kb downstream 3376   true scaffold_3: 5590649-5594024 Arabidopsis lyrata
AL3G25720 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 5590649-5591148 Arabidopsis lyrata
AL3G25720 1.0kb upstream 1.0kb upstream 3876   true scaffold_3: 5591149-5595024 Arabidopsis lyrata
AL3G25720 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 5594025-5595024 Arabidopsis lyrata
AL3G25720 1.0kb downstream 1.0kb downstream 3876   true scaffold_3: 5590149-5594024 Arabidopsis lyrata
AL3G25720 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 5590149-5591148 Arabidopsis lyrata
AL3G25720 2.0kb upstream 2.0kb upstream 4876   true scaffold_3: 5591149-5596024 Arabidopsis lyrata
AL3G25720 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 5594025-5596024 Arabidopsis lyrata
AL3G25720 2.0kb downstream 2.0kb downstream 4876   true scaffold_3: 5589149-5594024 Arabidopsis lyrata
AL3G25720 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 5589149-5591148 Arabidopsis lyrata
AL3G25720 5.0kb upstream 5.0kb upstream 7876   true scaffold_3: 5591149-5599024 Arabidopsis lyrata
AL3G25720 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 5594025-5599024 Arabidopsis lyrata
AL3G25720 5.0kb downstream 5.0kb downstream 7876   true scaffold_3: 5586149-5594024 Arabidopsis lyrata
AL3G25720 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 5586149-5591148 Arabidopsis lyrata
AL3G25720 10.0kb upstream 10.0kb upstream 12876   true scaffold_3: 5591149-5604024 Arabidopsis lyrata
AL3G25720 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 5594025-5604024 Arabidopsis lyrata
AL3G25720 10.0kb downstream 10.0kb downstream 12876   true scaffold_3: 5581149-5594024 Arabidopsis lyrata
AL3G25720 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 5581149-5591148 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374256 5261 Brassicaceae View MSA
123829075 5264 Brassicales-Malvales View MSA
124336597 5266 SBM View MSA
124242009 5268 Malvidae View MSA
124065563 5270 Rosid View MSA
123738735 5271 Pentapetalae View MSA
122791879 5272 Eudicot View MSA
122041755 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain