Gene : AL3G32780 A. lyrata v2.1

Defline:  (1 of 8) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  2173
Name:  ? AL3G32780 Secondary Identifier:  ? PAC:35942985

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G32780 0.5kb upstream 0.5kb upstream 2005   true scaffold_3: 8356157-8358161 Arabidopsis lyrata
AL3G32780 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 8357662-8358161 Arabidopsis lyrata
AL3G32780 0.5kb downstream 0.5kb downstream 2005   true scaffold_3: 8355657-8357661 Arabidopsis lyrata
AL3G32780 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 8355657-8356156 Arabidopsis lyrata
AL3G32780 1.0kb upstream 1.0kb upstream 2505   true scaffold_3: 8356157-8358661 Arabidopsis lyrata
AL3G32780 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 8357662-8358661 Arabidopsis lyrata
AL3G32780 1.0kb downstream 1.0kb downstream 2505   true scaffold_3: 8355157-8357661 Arabidopsis lyrata
AL3G32780 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 8355157-8356156 Arabidopsis lyrata
AL3G32780 2.0kb upstream 2.0kb upstream 3505   true scaffold_3: 8356157-8359661 Arabidopsis lyrata
AL3G32780 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 8357662-8359661 Arabidopsis lyrata
AL3G32780 2.0kb downstream 2.0kb downstream 3505   true scaffold_3: 8354157-8357661 Arabidopsis lyrata
AL3G32780 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 8354157-8356156 Arabidopsis lyrata
AL3G32780 5.0kb upstream 5.0kb upstream 6505   true scaffold_3: 8356157-8362661 Arabidopsis lyrata
AL3G32780 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 8357662-8362661 Arabidopsis lyrata
AL3G32780 5.0kb downstream 5.0kb downstream 6505   true scaffold_3: 8351157-8357661 Arabidopsis lyrata
AL3G32780 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 8351157-8356156 Arabidopsis lyrata
AL3G32780 10.0kb upstream 10.0kb upstream 11505   true scaffold_3: 8356157-8367661 Arabidopsis lyrata
AL3G32780 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 8357662-8367661 Arabidopsis lyrata
AL3G32780 10.0kb downstream 10.0kb downstream 11505   true scaffold_3: 8346157-8357661 Arabidopsis lyrata
AL3G32780 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 8346157-8356156 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379153 5261 Brassicaceae View MSA
123802114 5264 Brassicales-Malvales View MSA
124299332 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain