Gene : AL3G42180 A. lyrata v2.1

Defline:  (1 of 1) PTHR11712:SF275 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL Genomic Order:  3041
Name:  ? AL3G42180 Secondary Identifier:  ? PAC:35942470

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata FASYN-ELONG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5156 Arabidopsis lyrata pathologic  
Alyrata PWY-5971 Arabidopsis lyrata pathologic  
Alyrata PWY-5989 Arabidopsis lyrata pathologic  
Alyrata PWY-6282 Arabidopsis lyrata pathologic  
Alyrata PWY-7388 Arabidopsis lyrata pathologic  
Alyrata PWY-7663 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G42180 0.5kb upstream 0.5kb upstream 4079   true scaffold_3: 13435049-13439127 Arabidopsis lyrata
AL3G42180 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 13438628-13439127 Arabidopsis lyrata
AL3G42180 0.5kb downstream 0.5kb downstream 4079   true scaffold_3: 13434549-13438627 Arabidopsis lyrata
AL3G42180 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 13434549-13435048 Arabidopsis lyrata
AL3G42180 1.0kb upstream 1.0kb upstream 4579   true scaffold_3: 13435049-13439627 Arabidopsis lyrata
AL3G42180 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 13438628-13439627 Arabidopsis lyrata
AL3G42180 1.0kb downstream 1.0kb downstream 4579   true scaffold_3: 13434049-13438627 Arabidopsis lyrata
AL3G42180 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 13434049-13435048 Arabidopsis lyrata
AL3G42180 2.0kb upstream 2.0kb upstream 5579   true scaffold_3: 13435049-13440627 Arabidopsis lyrata
AL3G42180 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 13438628-13440627 Arabidopsis lyrata
AL3G42180 2.0kb downstream 2.0kb downstream 5579   true scaffold_3: 13433049-13438627 Arabidopsis lyrata
AL3G42180 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 13433049-13435048 Arabidopsis lyrata
AL3G42180 5.0kb upstream 5.0kb upstream 8579   true scaffold_3: 13435049-13443627 Arabidopsis lyrata
AL3G42180 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 13438628-13443627 Arabidopsis lyrata
AL3G42180 5.0kb downstream 5.0kb downstream 8579   true scaffold_3: 13430049-13438627 Arabidopsis lyrata
AL3G42180 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 13430049-13435048 Arabidopsis lyrata
AL3G42180 10.0kb upstream 10.0kb upstream 13579   true scaffold_3: 13435049-13448627 Arabidopsis lyrata
AL3G42180 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 13438628-13448627 Arabidopsis lyrata
AL3G42180 10.0kb downstream 10.0kb downstream 13579   true scaffold_3: 13425049-13438627 Arabidopsis lyrata
AL3G42180 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 13425049-13435048 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371309 5261 Brassicaceae View MSA
123829991 5264 Brassicales-Malvales View MSA
124344955 5266 SBM View MSA
124240268 5268 Malvidae View MSA
124060523 5270 Rosid View MSA
123738041 5271 Pentapetalae View MSA
122786623 5272 Eudicot View MSA
122051170 5273 Angiosperm View MSA
121345587 5274 Embryophyte View MSA
123424058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain