Gene : AL3G43780 A. lyrata v2.1
Defline:  (1 of 6) PF00421 - Photosystem II protein (PSII) Genomic Order:  3178
Name:  ? AL3G43780 Secondary Identifier:  ? PAC:35943657
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G43780 0.5kb upstream 0.5kb upstream 4105   true scaffold_3: 14667117-14671221 Arabidopsis lyrata
AL3G43780 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 14670722-14671221 Arabidopsis lyrata
AL3G43780 0.5kb downstream 0.5kb downstream 4105   true scaffold_3: 14666617-14670721 Arabidopsis lyrata
AL3G43780 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 14666617-14667116 Arabidopsis lyrata
AL3G43780 1.0kb upstream 1.0kb upstream 4605   true scaffold_3: 14667117-14671721 Arabidopsis lyrata
AL3G43780 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 14670722-14671721 Arabidopsis lyrata
AL3G43780 1.0kb downstream 1.0kb downstream 4605   true scaffold_3: 14666117-14670721 Arabidopsis lyrata
AL3G43780 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 14666117-14667116 Arabidopsis lyrata
AL3G43780 2.0kb upstream 2.0kb upstream 5605   true scaffold_3: 14667117-14672721 Arabidopsis lyrata
AL3G43780 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 14670722-14672721 Arabidopsis lyrata
AL3G43780 2.0kb downstream 2.0kb downstream 5605   true scaffold_3: 14665117-14670721 Arabidopsis lyrata
AL3G43780 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 14665117-14667116 Arabidopsis lyrata
AL3G43780 5.0kb upstream 5.0kb upstream 8605   true scaffold_3: 14667117-14675721 Arabidopsis lyrata
AL3G43780 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 14670722-14675721 Arabidopsis lyrata
AL3G43780 5.0kb downstream 5.0kb downstream 8605   true scaffold_3: 14662117-14670721 Arabidopsis lyrata
AL3G43780 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 14662117-14667116 Arabidopsis lyrata
AL3G43780 10.0kb upstream 10.0kb upstream 13605   true scaffold_3: 14667117-14680721 Arabidopsis lyrata
AL3G43780 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 14670722-14680721 Arabidopsis lyrata
AL3G43780 10.0kb downstream 10.0kb downstream 13605   true scaffold_3: 14657117-14670721 Arabidopsis lyrata
AL3G43780 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 14657117-14667116 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338529 5261 Brassicaceae View MSA
123779095 5264 Brassicales-Malvales View MSA
124277428 5266 SBM View MSA
124251306 5268 Malvidae View MSA
124051318 5270 Rosid View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain