Gene : AL3G47820 A. lyrata v2.1

Defline:  (1 of 2) PTHR10168:SF14 - GLUTAREDOXIN-C5, CHLOROPLASTIC-RELATED Genomic Order:  3500
Name:  ? AL3G47820 Secondary Identifier:  ? PAC:35940618

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata THIOREDOX-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G47820 0.5kb upstream 0.5kb upstream 2773   true scaffold_3: 20509439-20512211 Arabidopsis lyrata
AL3G47820 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 20509439-20509938 Arabidopsis lyrata
AL3G47820 0.5kb downstream 0.5kb downstream 2773   true scaffold_3: 20509939-20512711 Arabidopsis lyrata
AL3G47820 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 20512212-20512711 Arabidopsis lyrata
AL3G47820 1.0kb upstream 1.0kb upstream 3273   true scaffold_3: 20508939-20512211 Arabidopsis lyrata
AL3G47820 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 20508939-20509938 Arabidopsis lyrata
AL3G47820 1.0kb downstream 1.0kb downstream 3273   true scaffold_3: 20509939-20513211 Arabidopsis lyrata
AL3G47820 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 20512212-20513211 Arabidopsis lyrata
AL3G47820 2.0kb upstream 2.0kb upstream 4273   true scaffold_3: 20507939-20512211 Arabidopsis lyrata
AL3G47820 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 20507939-20509938 Arabidopsis lyrata
AL3G47820 2.0kb downstream 2.0kb downstream 4273   true scaffold_3: 20509939-20514211 Arabidopsis lyrata
AL3G47820 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 20512212-20514211 Arabidopsis lyrata
AL3G47820 5.0kb upstream 5.0kb upstream 7273   true scaffold_3: 20504939-20512211 Arabidopsis lyrata
AL3G47820 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 20504939-20509938 Arabidopsis lyrata
AL3G47820 5.0kb downstream 5.0kb downstream 7273   true scaffold_3: 20509939-20517211 Arabidopsis lyrata
AL3G47820 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 20512212-20517211 Arabidopsis lyrata
AL3G47820 10.0kb upstream 10.0kb upstream 12273   true scaffold_3: 20499939-20512211 Arabidopsis lyrata
AL3G47820 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 20499939-20509938 Arabidopsis lyrata
AL3G47820 10.0kb downstream 10.0kb downstream 12273   true scaffold_3: 20509939-20522211 Arabidopsis lyrata
AL3G47820 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 20512212-20522211 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026565 5273 Angiosperm View MSA
122370271 5261 Brassicaceae View MSA
123799928 5264 Brassicales-Malvales View MSA
124297397 5266 SBM View MSA
124252514 5268 Malvidae View MSA
124066843 5270 Rosid View MSA
123737863 5271 Pentapetalae View MSA
122787960 5272 Eudicot View MSA
121350843 5274 Embryophyte View MSA
123428660 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain