Gene : AL3G50630 A. lyrata v2.1
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3754
Name:  ? AL3G50630 Secondary Identifier:  ? PAC:35941779
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL3G50630 0.5kb upstream 0.5kb upstream 927   true scaffold_3: 22182569-22183495 Arabidopsis lyrata
AL3G50630 0.5kb upstream 0.5kb upstream 500   false scaffold_3: 22182569-22183068 Arabidopsis lyrata
AL3G50630 0.5kb downstream 0.5kb downstream 927   true scaffold_3: 22183069-22183995 Arabidopsis lyrata
AL3G50630 0.5kb downstream 0.5kb downstream 500   false scaffold_3: 22183496-22183995 Arabidopsis lyrata
AL3G50630 1.0kb upstream 1.0kb upstream 1427   true scaffold_3: 22182069-22183495 Arabidopsis lyrata
AL3G50630 1.0kb upstream 1.0kb upstream 1000   false scaffold_3: 22182069-22183068 Arabidopsis lyrata
AL3G50630 1.0kb downstream 1.0kb downstream 1427   true scaffold_3: 22183069-22184495 Arabidopsis lyrata
AL3G50630 1.0kb downstream 1.0kb downstream 1000   false scaffold_3: 22183496-22184495 Arabidopsis lyrata
AL3G50630 2.0kb upstream 2.0kb upstream 2427   true scaffold_3: 22181069-22183495 Arabidopsis lyrata
AL3G50630 2.0kb upstream 2.0kb upstream 2000   false scaffold_3: 22181069-22183068 Arabidopsis lyrata
AL3G50630 2.0kb downstream 2.0kb downstream 2427   true scaffold_3: 22183069-22185495 Arabidopsis lyrata
AL3G50630 2.0kb downstream 2.0kb downstream 2000   false scaffold_3: 22183496-22185495 Arabidopsis lyrata
AL3G50630 5.0kb upstream 5.0kb upstream 5427   true scaffold_3: 22178069-22183495 Arabidopsis lyrata
AL3G50630 5.0kb upstream 5.0kb upstream 5000   false scaffold_3: 22178069-22183068 Arabidopsis lyrata
AL3G50630 5.0kb downstream 5.0kb downstream 5427   true scaffold_3: 22183069-22188495 Arabidopsis lyrata
AL3G50630 5.0kb downstream 5.0kb downstream 5000   false scaffold_3: 22183496-22188495 Arabidopsis lyrata
AL3G50630 10.0kb upstream 10.0kb upstream 10427   true scaffold_3: 22173069-22183495 Arabidopsis lyrata
AL3G50630 10.0kb upstream 10.0kb upstream 10000   false scaffold_3: 22173069-22183068 Arabidopsis lyrata
AL3G50630 10.0kb downstream 10.0kb downstream 10427   true scaffold_3: 22183069-22193495 Arabidopsis lyrata
AL3G50630 10.0kb downstream 10.0kb downstream 10000   false scaffold_3: 22183496-22193495 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362654 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain