Gene : AL4G12000 A. lyrata v2.1

Defline:  (1 of 1) PTHR13697//PTHR13697:SF20 - PHOSPHOFRUCTOKINASE // SUBFAMILY NOT NAMED Genomic Order:  179
Name:  ? AL4G12000 Secondary Identifier:  ? PAC:35924186

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ANAEROFRUCAT-PWY Arabidopsis lyrata pathologic  
Alyrata ANAGLYCOLYSIS-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-1042 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G12000 0.5kb upstream 0.5kb upstream 3934   true scaffold_4: 983338-987271 Arabidopsis lyrata
AL4G12000 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 983338-983837 Arabidopsis lyrata
AL4G12000 0.5kb downstream 0.5kb downstream 3934   true scaffold_4: 983838-987771 Arabidopsis lyrata
AL4G12000 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 987272-987771 Arabidopsis lyrata
AL4G12000 1.0kb upstream 1.0kb upstream 4434   true scaffold_4: 982838-987271 Arabidopsis lyrata
AL4G12000 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 982838-983837 Arabidopsis lyrata
AL4G12000 1.0kb downstream 1.0kb downstream 4434   true scaffold_4: 983838-988271 Arabidopsis lyrata
AL4G12000 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 987272-988271 Arabidopsis lyrata
AL4G12000 2.0kb upstream 2.0kb upstream 5434   true scaffold_4: 981838-987271 Arabidopsis lyrata
AL4G12000 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 981838-983837 Arabidopsis lyrata
AL4G12000 2.0kb downstream 2.0kb downstream 5434   true scaffold_4: 983838-989271 Arabidopsis lyrata
AL4G12000 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 987272-989271 Arabidopsis lyrata
AL4G12000 5.0kb upstream 5.0kb upstream 8434   true scaffold_4: 978838-987271 Arabidopsis lyrata
AL4G12000 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 978838-983837 Arabidopsis lyrata
AL4G12000 5.0kb downstream 5.0kb downstream 8434   true scaffold_4: 983838-992271 Arabidopsis lyrata
AL4G12000 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 987272-992271 Arabidopsis lyrata
AL4G12000 10.0kb upstream 10.0kb upstream 13434   true scaffold_4: 973838-987271 Arabidopsis lyrata
AL4G12000 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 973838-983837 Arabidopsis lyrata
AL4G12000 10.0kb downstream 10.0kb downstream 13434   true scaffold_4: 983838-997271 Arabidopsis lyrata
AL4G12000 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 987272-997271 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375499 5261 Brassicaceae View MSA
123831000 5264 Brassicales-Malvales View MSA
124339627 5266 SBM View MSA
124240075 5268 Malvidae View MSA
124074874 5270 Rosid View MSA
123750094 5271 Pentapetalae View MSA
122793995 5272 Eudicot View MSA
122043440 5273 Angiosperm View MSA
121347937 5274 Embryophyte View MSA
123424464 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain