Gene : AL4G12410 A. lyrata v2.1

Defline:  (1 of 6) K00511 - squalene monooxygenase (SQLE, ERG1) Genomic Order:  216
Name:  ? AL4G12410 Secondary Identifier:  ? PAC:35923869

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-2541 Arabidopsis lyrata pathologic  
Alyrata PWY-5670 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G12410 0.5kb upstream 0.5kb upstream 6381   true scaffold_4: 1275594-1281974 Arabidopsis lyrata
AL4G12410 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 1281475-1281974 Arabidopsis lyrata
AL4G12410 0.5kb downstream 0.5kb downstream 6381   true scaffold_4: 1275094-1281474 Arabidopsis lyrata
AL4G12410 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 1275094-1275593 Arabidopsis lyrata
AL4G12410 1.0kb upstream 1.0kb upstream 6881   true scaffold_4: 1275594-1282474 Arabidopsis lyrata
AL4G12410 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 1281475-1282474 Arabidopsis lyrata
AL4G12410 1.0kb downstream 1.0kb downstream 6881   true scaffold_4: 1274594-1281474 Arabidopsis lyrata
AL4G12410 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 1274594-1275593 Arabidopsis lyrata
AL4G12410 2.0kb upstream 2.0kb upstream 7881   true scaffold_4: 1275594-1283474 Arabidopsis lyrata
AL4G12410 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 1281475-1283474 Arabidopsis lyrata
AL4G12410 2.0kb downstream 2.0kb downstream 7881   true scaffold_4: 1273594-1281474 Arabidopsis lyrata
AL4G12410 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 1273594-1275593 Arabidopsis lyrata
AL4G12410 5.0kb upstream 5.0kb upstream 10881   true scaffold_4: 1275594-1286474 Arabidopsis lyrata
AL4G12410 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 1281475-1286474 Arabidopsis lyrata
AL4G12410 5.0kb downstream 5.0kb downstream 10881   true scaffold_4: 1270594-1281474 Arabidopsis lyrata
AL4G12410 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 1270594-1275593 Arabidopsis lyrata
AL4G12410 10.0kb upstream 10.0kb upstream 15881   true scaffold_4: 1275594-1291474 Arabidopsis lyrata
AL4G12410 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 1281475-1291474 Arabidopsis lyrata
AL4G12410 10.0kb downstream 10.0kb downstream 15881   true scaffold_4: 1265594-1281474 Arabidopsis lyrata
AL4G12410 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 1265594-1275593 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380334 5261 Brassicaceae View MSA
123838211 5264 Brassicales-Malvales View MSA
124342457 5266 SBM View MSA
124254451 5268 Malvidae View MSA
124072398 5270 Rosid View MSA
123747368 5271 Pentapetalae View MSA
122788930 5272 Eudicot View MSA
122042003 5273 Angiosperm View MSA
121344187 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain