Gene : AL4G32030 A. lyrata v2.1

Defline:  (1 of 2) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1922
Name:  ? AL4G32030 Secondary Identifier:  ? PAC:35923288

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G32030 0.5kb upstream 0.5kb upstream 2128   true scaffold_4: 17020117-17022244 Arabidopsis lyrata
AL4G32030 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 17021745-17022244 Arabidopsis lyrata
AL4G32030 0.5kb downstream 0.5kb downstream 2128   true scaffold_4: 17019617-17021744 Arabidopsis lyrata
AL4G32030 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 17019617-17020116 Arabidopsis lyrata
AL4G32030 1.0kb upstream 1.0kb upstream 2628   true scaffold_4: 17020117-17022744 Arabidopsis lyrata
AL4G32030 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 17021745-17022744 Arabidopsis lyrata
AL4G32030 1.0kb downstream 1.0kb downstream 2628   true scaffold_4: 17019117-17021744 Arabidopsis lyrata
AL4G32030 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 17019117-17020116 Arabidopsis lyrata
AL4G32030 2.0kb upstream 2.0kb upstream 3628   true scaffold_4: 17020117-17023744 Arabidopsis lyrata
AL4G32030 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 17021745-17023744 Arabidopsis lyrata
AL4G32030 2.0kb downstream 2.0kb downstream 3628   true scaffold_4: 17018117-17021744 Arabidopsis lyrata
AL4G32030 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 17018117-17020116 Arabidopsis lyrata
AL4G32030 5.0kb upstream 5.0kb upstream 6628   true scaffold_4: 17020117-17026744 Arabidopsis lyrata
AL4G32030 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 17021745-17026744 Arabidopsis lyrata
AL4G32030 5.0kb downstream 5.0kb downstream 6628   true scaffold_4: 17015117-17021744 Arabidopsis lyrata
AL4G32030 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 17015117-17020116 Arabidopsis lyrata
AL4G32030 10.0kb upstream 10.0kb upstream 11628   true scaffold_4: 17020117-17031744 Arabidopsis lyrata
AL4G32030 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 17021745-17031744 Arabidopsis lyrata
AL4G32030 10.0kb downstream 10.0kb downstream 11628   true scaffold_4: 17010117-17021744 Arabidopsis lyrata
AL4G32030 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 17010117-17020116 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370445 5261 Brassicaceae View MSA
123837010 5264 Brassicales-Malvales View MSA
124350441 5266 SBM View MSA
124240092 5268 Malvidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain