Gene : AL4G40180 A. lyrata v2.1

Defline:  (1 of 2) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Genomic Order:  2699
Name:  ? AL4G40180 Secondary Identifier:  ? PAC:35924409

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL4G40180 0.5kb upstream 0.5kb upstream 2941   true scaffold_4: 20472159-20475099 Arabidopsis lyrata
AL4G40180 0.5kb upstream 0.5kb upstream 500   false scaffold_4: 20474600-20475099 Arabidopsis lyrata
AL4G40180 0.5kb downstream 0.5kb downstream 2941   true scaffold_4: 20471659-20474599 Arabidopsis lyrata
AL4G40180 0.5kb downstream 0.5kb downstream 500   false scaffold_4: 20471659-20472158 Arabidopsis lyrata
AL4G40180 1.0kb upstream 1.0kb upstream 3441   true scaffold_4: 20472159-20475599 Arabidopsis lyrata
AL4G40180 1.0kb upstream 1.0kb upstream 1000   false scaffold_4: 20474600-20475599 Arabidopsis lyrata
AL4G40180 1.0kb downstream 1.0kb downstream 3441   true scaffold_4: 20471159-20474599 Arabidopsis lyrata
AL4G40180 1.0kb downstream 1.0kb downstream 1000   false scaffold_4: 20471159-20472158 Arabidopsis lyrata
AL4G40180 2.0kb upstream 2.0kb upstream 4441   true scaffold_4: 20472159-20476599 Arabidopsis lyrata
AL4G40180 2.0kb upstream 2.0kb upstream 2000   false scaffold_4: 20474600-20476599 Arabidopsis lyrata
AL4G40180 2.0kb downstream 2.0kb downstream 4441   true scaffold_4: 20470159-20474599 Arabidopsis lyrata
AL4G40180 2.0kb downstream 2.0kb downstream 2000   false scaffold_4: 20470159-20472158 Arabidopsis lyrata
AL4G40180 5.0kb upstream 5.0kb upstream 7441   true scaffold_4: 20472159-20479599 Arabidopsis lyrata
AL4G40180 5.0kb upstream 5.0kb upstream 5000   false scaffold_4: 20474600-20479599 Arabidopsis lyrata
AL4G40180 5.0kb downstream 5.0kb downstream 7441   true scaffold_4: 20467159-20474599 Arabidopsis lyrata
AL4G40180 5.0kb downstream 5.0kb downstream 5000   false scaffold_4: 20467159-20472158 Arabidopsis lyrata
AL4G40180 10.0kb upstream 10.0kb upstream 12441   true scaffold_4: 20472159-20484599 Arabidopsis lyrata
AL4G40180 10.0kb upstream 10.0kb upstream 10000   false scaffold_4: 20474600-20484599 Arabidopsis lyrata
AL4G40180 10.0kb downstream 10.0kb downstream 12441   true scaffold_4: 20462159-20474599 Arabidopsis lyrata
AL4G40180 10.0kb downstream 10.0kb downstream 10000   false scaffold_4: 20462159-20472158 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368990 5261 Brassicaceae View MSA
123838007 5264 Brassicales-Malvales View MSA
124346929 5266 SBM View MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain