Gene : AL5G17190 A. lyrata v2.1

Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  635
Name:  ? AL5G17190 Secondary Identifier:  ? PAC:35919175

Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ARGSYNBSUB-PWY Arabidopsis lyrata pathologic  
Alyrata ARGSYN-PWY Arabidopsis lyrata pathologic  
Alyrata CITRULBIO-PWY Arabidopsis lyrata pathologic  
Alyrata GLUTAMINDEG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY0-162 Arabidopsis lyrata pathologic  
Alyrata PWY-4984 Arabidopsis lyrata pathologic  
Alyrata PWY-5686 Arabidopsis lyrata pathologic  
Alyrata PWY-7211 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G17190 0.5kb upstream 0.5kb upstream 3086   true scaffold_5: 4048305-4051390 Arabidopsis lyrata
AL5G17190 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 4050891-4051390 Arabidopsis lyrata
AL5G17190 0.5kb downstream 0.5kb downstream 3086   true scaffold_5: 4047805-4050890 Arabidopsis lyrata
AL5G17190 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 4047805-4048304 Arabidopsis lyrata
AL5G17190 1.0kb upstream 1.0kb upstream 3586   true scaffold_5: 4048305-4051890 Arabidopsis lyrata
AL5G17190 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 4050891-4051890 Arabidopsis lyrata
AL5G17190 1.0kb downstream 1.0kb downstream 3586   true scaffold_5: 4047305-4050890 Arabidopsis lyrata
AL5G17190 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 4047305-4048304 Arabidopsis lyrata
AL5G17190 2.0kb upstream 2.0kb upstream 4586   true scaffold_5: 4048305-4052890 Arabidopsis lyrata
AL5G17190 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 4050891-4052890 Arabidopsis lyrata
AL5G17190 2.0kb downstream 2.0kb downstream 4586   true scaffold_5: 4046305-4050890 Arabidopsis lyrata
AL5G17190 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 4046305-4048304 Arabidopsis lyrata
AL5G17190 5.0kb upstream 5.0kb upstream 7586   true scaffold_5: 4048305-4055890 Arabidopsis lyrata
AL5G17190 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 4050891-4055890 Arabidopsis lyrata
AL5G17190 5.0kb downstream 5.0kb downstream 7586   true scaffold_5: 4043305-4050890 Arabidopsis lyrata
AL5G17190 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 4043305-4048304 Arabidopsis lyrata
AL5G17190 10.0kb upstream 10.0kb upstream 12586   true scaffold_5: 4048305-4060890 Arabidopsis lyrata
AL5G17190 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 4050891-4060890 Arabidopsis lyrata
AL5G17190 10.0kb downstream 10.0kb downstream 12586   true scaffold_5: 4038305-4050890 Arabidopsis lyrata
AL5G17190 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 4038305-4048304 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372919 5261 Brassicaceae View MSA
123839532 5264 Brassicales-Malvales View MSA
124338612 5266 SBM View MSA
124252256 5268 Malvidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain