Gene : AL5G33980 A. lyrata v2.1

Defline:  (1 of 2) PTHR22835//PTHR22835:SF146 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2105
Name:  ? AL5G33980 Secondary Identifier:  ? PAC:35919560

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata LIPAS-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G33980 0.5kb upstream 0.5kb upstream 2395   true scaffold_5: 16435448-16437842 Arabidopsis lyrata
AL5G33980 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 16437343-16437842 Arabidopsis lyrata
AL5G33980 0.5kb downstream 0.5kb downstream 2395   true scaffold_5: 16434948-16437342 Arabidopsis lyrata
AL5G33980 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 16434948-16435447 Arabidopsis lyrata
AL5G33980 1.0kb upstream 1.0kb upstream 2895   true scaffold_5: 16435448-16438342 Arabidopsis lyrata
AL5G33980 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 16437343-16438342 Arabidopsis lyrata
AL5G33980 1.0kb downstream 1.0kb downstream 2895   true scaffold_5: 16434448-16437342 Arabidopsis lyrata
AL5G33980 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 16434448-16435447 Arabidopsis lyrata
AL5G33980 2.0kb upstream 2.0kb upstream 3895   true scaffold_5: 16435448-16439342 Arabidopsis lyrata
AL5G33980 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 16437343-16439342 Arabidopsis lyrata
AL5G33980 2.0kb downstream 2.0kb downstream 3895   true scaffold_5: 16433448-16437342 Arabidopsis lyrata
AL5G33980 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 16433448-16435447 Arabidopsis lyrata
AL5G33980 5.0kb upstream 5.0kb upstream 6895   true scaffold_5: 16435448-16442342 Arabidopsis lyrata
AL5G33980 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 16437343-16442342 Arabidopsis lyrata
AL5G33980 5.0kb downstream 5.0kb downstream 6895   true scaffold_5: 16430448-16437342 Arabidopsis lyrata
AL5G33980 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 16430448-16435447 Arabidopsis lyrata
AL5G33980 10.0kb upstream 10.0kb upstream 11895   true scaffold_5: 16435448-16447342 Arabidopsis lyrata
AL5G33980 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 16437343-16447342 Arabidopsis lyrata
AL5G33980 10.0kb downstream 10.0kb downstream 11895   true scaffold_5: 16425448-16437342 Arabidopsis lyrata
AL5G33980 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 16425448-16435447 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373528 5261 Brassicaceae View MSA
123840328 5264 Brassicales-Malvales View MSA
124337101 5266 SBM View MSA
124247854 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain