Gene : AL5G33100 A. lyrata v2.1

Defline:  (1 of 2) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  2024
Name:  ? AL5G33100 Secondary Identifier:  ? PAC:35921028

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G33100 0.5kb upstream 0.5kb upstream 2180   true scaffold_5: 16082386-16084565 Arabidopsis lyrata
AL5G33100 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 16084066-16084565 Arabidopsis lyrata
AL5G33100 0.5kb downstream 0.5kb downstream 2180   true scaffold_5: 16081886-16084065 Arabidopsis lyrata
AL5G33100 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 16081886-16082385 Arabidopsis lyrata
AL5G33100 1.0kb upstream 1.0kb upstream 2680   true scaffold_5: 16082386-16085065 Arabidopsis lyrata
AL5G33100 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 16084066-16085065 Arabidopsis lyrata
AL5G33100 1.0kb downstream 1.0kb downstream 2680   true scaffold_5: 16081386-16084065 Arabidopsis lyrata
AL5G33100 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 16081386-16082385 Arabidopsis lyrata
AL5G33100 2.0kb upstream 2.0kb upstream 3680   true scaffold_5: 16082386-16086065 Arabidopsis lyrata
AL5G33100 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 16084066-16086065 Arabidopsis lyrata
AL5G33100 2.0kb downstream 2.0kb downstream 3680   true scaffold_5: 16080386-16084065 Arabidopsis lyrata
AL5G33100 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 16080386-16082385 Arabidopsis lyrata
AL5G33100 5.0kb upstream 5.0kb upstream 6680   true scaffold_5: 16082386-16089065 Arabidopsis lyrata
AL5G33100 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 16084066-16089065 Arabidopsis lyrata
AL5G33100 5.0kb downstream 5.0kb downstream 6680   true scaffold_5: 16077386-16084065 Arabidopsis lyrata
AL5G33100 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 16077386-16082385 Arabidopsis lyrata
AL5G33100 10.0kb upstream 10.0kb upstream 11680   true scaffold_5: 16082386-16094065 Arabidopsis lyrata
AL5G33100 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 16084066-16094065 Arabidopsis lyrata
AL5G33100 10.0kb downstream 10.0kb downstream 11680   true scaffold_5: 16072386-16084065 Arabidopsis lyrata
AL5G33100 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 16072386-16082385 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360588 5261 Brassicaceae View MSA
123837010 5264 Brassicales-Malvales View MSA
124350441 5266 SBM View MSA
124240092 5268 Malvidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain