Gene : AL5G32280 A. lyrata v2.1

Defline:  (1 of 1) 2.5.1.62 - Chlorophyll synthase Genomic Order:  1947
Name:  ? AL5G32280 Secondary Identifier:  ? PAC:35921510

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5064 Arabidopsis lyrata pathologic  
Alyrata PWY-5068 Arabidopsis lyrata pathologic  
Alyrata PWY-5086 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G32280 0.5kb upstream 0.5kb upstream 3837   true scaffold_5: 15793261-15797097 Arabidopsis lyrata
AL5G32280 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 15796598-15797097 Arabidopsis lyrata
AL5G32280 0.5kb downstream 0.5kb downstream 3837   true scaffold_5: 15792761-15796597 Arabidopsis lyrata
AL5G32280 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 15792761-15793260 Arabidopsis lyrata
AL5G32280 1.0kb upstream 1.0kb upstream 4337   true scaffold_5: 15793261-15797597 Arabidopsis lyrata
AL5G32280 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 15796598-15797597 Arabidopsis lyrata
AL5G32280 1.0kb downstream 1.0kb downstream 4337   true scaffold_5: 15792261-15796597 Arabidopsis lyrata
AL5G32280 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 15792261-15793260 Arabidopsis lyrata
AL5G32280 2.0kb upstream 2.0kb upstream 5337   true scaffold_5: 15793261-15798597 Arabidopsis lyrata
AL5G32280 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 15796598-15798597 Arabidopsis lyrata
AL5G32280 2.0kb downstream 2.0kb downstream 5337   true scaffold_5: 15791261-15796597 Arabidopsis lyrata
AL5G32280 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 15791261-15793260 Arabidopsis lyrata
AL5G32280 5.0kb upstream 5.0kb upstream 8337   true scaffold_5: 15793261-15801597 Arabidopsis lyrata
AL5G32280 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 15796598-15801597 Arabidopsis lyrata
AL5G32280 5.0kb downstream 5.0kb downstream 8337   true scaffold_5: 15788261-15796597 Arabidopsis lyrata
AL5G32280 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 15788261-15793260 Arabidopsis lyrata
AL5G32280 10.0kb upstream 10.0kb upstream 13337   true scaffold_5: 15793261-15806597 Arabidopsis lyrata
AL5G32280 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 15796598-15806597 Arabidopsis lyrata
AL5G32280 10.0kb downstream 10.0kb downstream 13337   true scaffold_5: 15783261-15796597 Arabidopsis lyrata
AL5G32280 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 15783261-15793260 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366791 5261 Brassicaceae View MSA
123840816 5264 Brassicales-Malvales View MSA
124343862 5266 SBM View MSA
124242139 5268 Malvidae View MSA
124067560 5270 Rosid View MSA
123737432 5271 Pentapetalae View MSA
122786780 5272 Eudicot View MSA
122042815 5273 Angiosperm View MSA
121346314 5274 Embryophyte View MSA
123424294 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain