Gene : AL5G35960 A. lyrata v2.1

Defline:  (1 of 1) PTHR23315:SF111 - U-BOX DOMAIN-CONTAINING PROTEIN 14 Genomic Order:  2296
Name:  ? AL5G35960 Secondary Identifier:  ? PAC:35921251

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G35960 0.5kb upstream 0.5kb upstream 3187   true scaffold_5: 17211515-17214701 Arabidopsis lyrata
AL5G35960 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 17211515-17212014 Arabidopsis lyrata
AL5G35960 0.5kb downstream 0.5kb downstream 3187   true scaffold_5: 17212015-17215201 Arabidopsis lyrata
AL5G35960 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 17214702-17215201 Arabidopsis lyrata
AL5G35960 1.0kb upstream 1.0kb upstream 3687   true scaffold_5: 17211015-17214701 Arabidopsis lyrata
AL5G35960 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 17211015-17212014 Arabidopsis lyrata
AL5G35960 1.0kb downstream 1.0kb downstream 3687   true scaffold_5: 17212015-17215701 Arabidopsis lyrata
AL5G35960 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 17214702-17215701 Arabidopsis lyrata
AL5G35960 2.0kb upstream 2.0kb upstream 4687   true scaffold_5: 17210015-17214701 Arabidopsis lyrata
AL5G35960 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 17210015-17212014 Arabidopsis lyrata
AL5G35960 2.0kb downstream 2.0kb downstream 4687   true scaffold_5: 17212015-17216701 Arabidopsis lyrata
AL5G35960 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 17214702-17216701 Arabidopsis lyrata
AL5G35960 5.0kb upstream 5.0kb upstream 7687   true scaffold_5: 17207015-17214701 Arabidopsis lyrata
AL5G35960 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 17207015-17212014 Arabidopsis lyrata
AL5G35960 5.0kb downstream 5.0kb downstream 7687   true scaffold_5: 17212015-17219701 Arabidopsis lyrata
AL5G35960 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 17214702-17219701 Arabidopsis lyrata
AL5G35960 10.0kb upstream 10.0kb upstream 12687   true scaffold_5: 17202015-17214701 Arabidopsis lyrata
AL5G35960 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 17202015-17212014 Arabidopsis lyrata
AL5G35960 10.0kb downstream 10.0kb downstream 12687   true scaffold_5: 17212015-17224701 Arabidopsis lyrata
AL5G35960 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 17214702-17224701 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363065 5261 Brassicaceae View MSA
123830304 5264 Brassicales-Malvales View MSA
124337480 5266 SBM View MSA
124237370 5268 Malvidae View MSA
124065418 5270 Rosid View MSA
123739906 5271 Pentapetalae View MSA
122790994 5272 Eudicot View MSA
122042286 5273 Angiosperm View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain