Gene : AL5G44350 A. lyrata v2.1

Defline:  (1 of 5) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  3088
Name:  ? AL5G44350 Secondary Identifier:  ? PAC:35921098

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL5G44350 0.5kb upstream 0.5kb upstream 2656   true scaffold_5: 20486144-20488799 Arabidopsis lyrata
AL5G44350 0.5kb upstream 0.5kb upstream 500   false scaffold_5: 20488300-20488799 Arabidopsis lyrata
AL5G44350 0.5kb downstream 0.5kb downstream 2656   true scaffold_5: 20485644-20488299 Arabidopsis lyrata
AL5G44350 0.5kb downstream 0.5kb downstream 500   false scaffold_5: 20485644-20486143 Arabidopsis lyrata
AL5G44350 1.0kb upstream 1.0kb upstream 3156   true scaffold_5: 20486144-20489299 Arabidopsis lyrata
AL5G44350 1.0kb upstream 1.0kb upstream 1000   false scaffold_5: 20488300-20489299 Arabidopsis lyrata
AL5G44350 1.0kb downstream 1.0kb downstream 3156   true scaffold_5: 20485144-20488299 Arabidopsis lyrata
AL5G44350 1.0kb downstream 1.0kb downstream 1000   false scaffold_5: 20485144-20486143 Arabidopsis lyrata
AL5G44350 2.0kb upstream 2.0kb upstream 4156   true scaffold_5: 20486144-20490299 Arabidopsis lyrata
AL5G44350 2.0kb upstream 2.0kb upstream 2000   false scaffold_5: 20488300-20490299 Arabidopsis lyrata
AL5G44350 2.0kb downstream 2.0kb downstream 4156   true scaffold_5: 20484144-20488299 Arabidopsis lyrata
AL5G44350 2.0kb downstream 2.0kb downstream 2000   false scaffold_5: 20484144-20486143 Arabidopsis lyrata
AL5G44350 5.0kb upstream 5.0kb upstream 7156   true scaffold_5: 20486144-20493299 Arabidopsis lyrata
AL5G44350 5.0kb upstream 5.0kb upstream 5000   false scaffold_5: 20488300-20493299 Arabidopsis lyrata
AL5G44350 5.0kb downstream 5.0kb downstream 7156   true scaffold_5: 20481144-20488299 Arabidopsis lyrata
AL5G44350 5.0kb downstream 5.0kb downstream 5000   false scaffold_5: 20481144-20486143 Arabidopsis lyrata
AL5G44350 10.0kb upstream 10.0kb upstream 12156   true scaffold_5: 20486144-20498299 Arabidopsis lyrata
AL5G44350 10.0kb upstream 10.0kb upstream 10000   false scaffold_5: 20488300-20498299 Arabidopsis lyrata
AL5G44350 10.0kb downstream 10.0kb downstream 12156   true scaffold_5: 20476144-20488299 Arabidopsis lyrata
AL5G44350 10.0kb downstream 10.0kb downstream 10000   false scaffold_5: 20476144-20486143 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369322 5261 Brassicaceae View MSA
123836007 5264 Brassicales-Malvales View MSA
124338508 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain