Gene : AL6G10950 A. lyrata v2.1

Defline:  (1 of 1) 2.1.1.205 - tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase Genomic Order:  88
Name:  ? AL6G10950 Secondary Identifier:  ? PAC:35929844

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6829 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G10950 0.5kb upstream 0.5kb upstream 3580   true scaffold_6: 356978-360557 Arabidopsis lyrata
AL6G10950 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 356978-357477 Arabidopsis lyrata
AL6G10950 0.5kb downstream 0.5kb downstream 3580   true scaffold_6: 357478-361057 Arabidopsis lyrata
AL6G10950 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 360558-361057 Arabidopsis lyrata
AL6G10950 1.0kb upstream 1.0kb upstream 4080   true scaffold_6: 356478-360557 Arabidopsis lyrata
AL6G10950 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 356478-357477 Arabidopsis lyrata
AL6G10950 1.0kb downstream 1.0kb downstream 4080   true scaffold_6: 357478-361557 Arabidopsis lyrata
AL6G10950 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 360558-361557 Arabidopsis lyrata
AL6G10950 2.0kb upstream 2.0kb upstream 5080   true scaffold_6: 355478-360557 Arabidopsis lyrata
AL6G10950 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 355478-357477 Arabidopsis lyrata
AL6G10950 2.0kb downstream 2.0kb downstream 5080   true scaffold_6: 357478-362557 Arabidopsis lyrata
AL6G10950 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 360558-362557 Arabidopsis lyrata
AL6G10950 5.0kb upstream 5.0kb upstream 8080   true scaffold_6: 352478-360557 Arabidopsis lyrata
AL6G10950 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 352478-357477 Arabidopsis lyrata
AL6G10950 5.0kb downstream 5.0kb downstream 8080   true scaffold_6: 357478-365557 Arabidopsis lyrata
AL6G10950 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 360558-365557 Arabidopsis lyrata
AL6G10950 10.0kb upstream 10.0kb upstream 13080   true scaffold_6: 347478-360557 Arabidopsis lyrata
AL6G10950 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 347478-357477 Arabidopsis lyrata
AL6G10950 10.0kb downstream 10.0kb downstream 13080   true scaffold_6: 357478-370557 Arabidopsis lyrata
AL6G10950 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 360558-370557 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373668 5261 Brassicaceae View MSA
123831274 5264 Brassicales-Malvales View MSA
124345014 5266 SBM View MSA
124239012 5268 Malvidae View MSA
124067188 5270 Rosid View MSA
123742065 5271 Pentapetalae View MSA
122791552 5272 Eudicot View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain