Gene : AL6G20200 A. lyrata v2.1

Defline:  (1 of 3) PTHR22849//PTHR22849:SF20 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  962
Name:  ? AL6G20200 Secondary Identifier:  ? PAC:35929591

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G20200 0.5kb upstream 0.5kb upstream 2004   true scaffold_6: 3858221-3860224 Arabidopsis lyrata
AL6G20200 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 3859725-3860224 Arabidopsis lyrata
AL6G20200 0.5kb downstream 0.5kb downstream 2004   true scaffold_6: 3857721-3859724 Arabidopsis lyrata
AL6G20200 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 3857721-3858220 Arabidopsis lyrata
AL6G20200 1.0kb upstream 1.0kb upstream 2504   true scaffold_6: 3858221-3860724 Arabidopsis lyrata
AL6G20200 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 3859725-3860724 Arabidopsis lyrata
AL6G20200 1.0kb downstream 1.0kb downstream 2504   true scaffold_6: 3857221-3859724 Arabidopsis lyrata
AL6G20200 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 3857221-3858220 Arabidopsis lyrata
AL6G20200 2.0kb upstream 2.0kb upstream 3504   true scaffold_6: 3858221-3861724 Arabidopsis lyrata
AL6G20200 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 3859725-3861724 Arabidopsis lyrata
AL6G20200 2.0kb downstream 2.0kb downstream 3504   true scaffold_6: 3856221-3859724 Arabidopsis lyrata
AL6G20200 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 3856221-3858220 Arabidopsis lyrata
AL6G20200 5.0kb upstream 5.0kb upstream 6504   true scaffold_6: 3858221-3864724 Arabidopsis lyrata
AL6G20200 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 3859725-3864724 Arabidopsis lyrata
AL6G20200 5.0kb downstream 5.0kb downstream 6504   true scaffold_6: 3853221-3859724 Arabidopsis lyrata
AL6G20200 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 3853221-3858220 Arabidopsis lyrata
AL6G20200 10.0kb upstream 10.0kb upstream 11504   true scaffold_6: 3858221-3869724 Arabidopsis lyrata
AL6G20200 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 3859725-3869724 Arabidopsis lyrata
AL6G20200 10.0kb downstream 10.0kb downstream 11504   true scaffold_6: 3848221-3859724 Arabidopsis lyrata
AL6G20200 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 3848221-3858220 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381582 5261 Brassicaceae View MSA
123833487 5264 Brassicales-Malvales View MSA
124351138 5266 SBM View MSA
124239746 5268 Malvidae View MSA
124071729 5270 Rosid View MSA
123744205 5271 Pentapetalae View MSA
122785881 5272 Eudicot View MSA
122041845 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain