Gene : AL6G17720 A. lyrata v2.1

Defline:  (1 of 4) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  728
Name:  ? AL6G17720 Secondary Identifier:  ? PAC:35929183

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G17720 0.5kb upstream 0.5kb upstream 2568   true scaffold_6: 2902240-2904807 Arabidopsis lyrata
AL6G17720 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 2902240-2902739 Arabidopsis lyrata
AL6G17720 0.5kb downstream 0.5kb downstream 2568   true scaffold_6: 2902740-2905307 Arabidopsis lyrata
AL6G17720 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 2904808-2905307 Arabidopsis lyrata
AL6G17720 1.0kb upstream 1.0kb upstream 3068   true scaffold_6: 2901740-2904807 Arabidopsis lyrata
AL6G17720 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 2901740-2902739 Arabidopsis lyrata
AL6G17720 1.0kb downstream 1.0kb downstream 3068   true scaffold_6: 2902740-2905807 Arabidopsis lyrata
AL6G17720 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 2904808-2905807 Arabidopsis lyrata
AL6G17720 2.0kb upstream 2.0kb upstream 4068   true scaffold_6: 2900740-2904807 Arabidopsis lyrata
AL6G17720 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 2900740-2902739 Arabidopsis lyrata
AL6G17720 2.0kb downstream 2.0kb downstream 4068   true scaffold_6: 2902740-2906807 Arabidopsis lyrata
AL6G17720 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 2904808-2906807 Arabidopsis lyrata
AL6G17720 5.0kb upstream 5.0kb upstream 7068   true scaffold_6: 2897740-2904807 Arabidopsis lyrata
AL6G17720 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 2897740-2902739 Arabidopsis lyrata
AL6G17720 5.0kb downstream 5.0kb downstream 7068   true scaffold_6: 2902740-2909807 Arabidopsis lyrata
AL6G17720 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 2904808-2909807 Arabidopsis lyrata
AL6G17720 10.0kb upstream 10.0kb upstream 12068   true scaffold_6: 2892740-2904807 Arabidopsis lyrata
AL6G17720 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 2892740-2902739 Arabidopsis lyrata
AL6G17720 10.0kb downstream 10.0kb downstream 12068   true scaffold_6: 2902740-2914807 Arabidopsis lyrata
AL6G17720 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 2904808-2914807 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372248 5261 Brassicaceae View MSA
123841334 5264 Brassicales-Malvales View MSA
124322903 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain