Gene : AL6G31540 A. lyrata v2.1

Defline:  (1 of 2) PTHR24071:SF7 - GTP-BINDING NUCLEAR PROTEIN RAN-2 Genomic Order:  2041
Name:  ? AL6G31540 Secondary Identifier:  ? PAC:35928806

Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ILEUDEG-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5136 Arabidopsis lyrata pathologic  
Alyrata PWY-5138 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-6435 Arabidopsis lyrata pathologic  
Alyrata PWY-7036 Arabidopsis lyrata pathologic  
Alyrata PWY-735 Arabidopsis lyrata pathologic  
Alyrata PWY-7606 Arabidopsis lyrata pathologic  
Alyrata VALDEG-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G31540 0.5kb upstream 0.5kb upstream 2082   true scaffold_6: 8444647-8446728 Arabidopsis lyrata
AL6G31540 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 8444647-8445146 Arabidopsis lyrata
AL6G31540 0.5kb downstream 0.5kb downstream 2082   true scaffold_6: 8445147-8447228 Arabidopsis lyrata
AL6G31540 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 8446729-8447228 Arabidopsis lyrata
AL6G31540 1.0kb upstream 1.0kb upstream 2582   true scaffold_6: 8444147-8446728 Arabidopsis lyrata
AL6G31540 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 8444147-8445146 Arabidopsis lyrata
AL6G31540 1.0kb downstream 1.0kb downstream 2582   true scaffold_6: 8445147-8447728 Arabidopsis lyrata
AL6G31540 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 8446729-8447728 Arabidopsis lyrata
AL6G31540 2.0kb upstream 2.0kb upstream 3582   true scaffold_6: 8443147-8446728 Arabidopsis lyrata
AL6G31540 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 8443147-8445146 Arabidopsis lyrata
AL6G31540 2.0kb downstream 2.0kb downstream 3582   true scaffold_6: 8445147-8448728 Arabidopsis lyrata
AL6G31540 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 8446729-8448728 Arabidopsis lyrata
AL6G31540 5.0kb upstream 5.0kb upstream 6582   true scaffold_6: 8440147-8446728 Arabidopsis lyrata
AL6G31540 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 8440147-8445146 Arabidopsis lyrata
AL6G31540 5.0kb downstream 5.0kb downstream 6582   true scaffold_6: 8445147-8451728 Arabidopsis lyrata
AL6G31540 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 8446729-8451728 Arabidopsis lyrata
AL6G31540 10.0kb upstream 10.0kb upstream 11582   true scaffold_6: 8435147-8446728 Arabidopsis lyrata
AL6G31540 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 8435147-8445146 Arabidopsis lyrata
AL6G31540 10.0kb downstream 10.0kb downstream 11582   true scaffold_6: 8445147-8456728 Arabidopsis lyrata
AL6G31540 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 8446729-8456728 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343281 5261 Brassicaceae View MSA
123783529 5264 Brassicales-Malvales View MSA
124281758 5266 SBM View MSA
124136462 5268 Malvidae View MSA
124073929 5270 Rosid View MSA
123749309 5271 Pentapetalae View MSA
122790069 5272 Eudicot View MSA
122051651 5273 Angiosperm View MSA
121349425 5274 Embryophyte View MSA
123424763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain