Gene : AL6G53550 A. lyrata v2.1

Defline:  (1 of 1) PTHR23084:SF156 - RADIAL SPOKE HEAD 10 HOMOLOG B2 Genomic Order:  4026
Name:  ? AL6G53550 Secondary Identifier:  ? PAC:35926793

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6351 Arabidopsis lyrata pathologic  
Alyrata PWY-6352 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G53550 0.5kb upstream 0.5kb upstream 5400   true scaffold_6: 25093922-25099321 Arabidopsis lyrata
AL6G53550 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 25093922-25094421 Arabidopsis lyrata
AL6G53550 0.5kb downstream 0.5kb downstream 5400   true scaffold_6: 25094422-25099821 Arabidopsis lyrata
AL6G53550 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 25099322-25099821 Arabidopsis lyrata
AL6G53550 1.0kb upstream 1.0kb upstream 5900   true scaffold_6: 25093422-25099321 Arabidopsis lyrata
AL6G53550 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 25093422-25094421 Arabidopsis lyrata
AL6G53550 1.0kb downstream 1.0kb downstream 5900   true scaffold_6: 25094422-25100321 Arabidopsis lyrata
AL6G53550 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 25099322-25100321 Arabidopsis lyrata
AL6G53550 2.0kb upstream 2.0kb upstream 6900   true scaffold_6: 25092422-25099321 Arabidopsis lyrata
AL6G53550 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 25092422-25094421 Arabidopsis lyrata
AL6G53550 2.0kb downstream 2.0kb downstream 6900   true scaffold_6: 25094422-25101321 Arabidopsis lyrata
AL6G53550 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 25099322-25101321 Arabidopsis lyrata
AL6G53550 5.0kb upstream 5.0kb upstream 9900   true scaffold_6: 25089422-25099321 Arabidopsis lyrata
AL6G53550 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 25089422-25094421 Arabidopsis lyrata
AL6G53550 5.0kb downstream 5.0kb downstream 9900   true scaffold_6: 25094422-25104321 Arabidopsis lyrata
AL6G53550 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 25099322-25104321 Arabidopsis lyrata
AL6G53550 10.0kb upstream 10.0kb upstream 14900   true scaffold_6: 25084422-25099321 Arabidopsis lyrata
AL6G53550 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 25084422-25094421 Arabidopsis lyrata
AL6G53550 10.0kb downstream 10.0kb downstream 14900   true scaffold_6: 25094422-25109321 Arabidopsis lyrata
AL6G53550 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 25099322-25109321 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377573 5261 Brassicaceae View MSA
123839636 5264 Brassicales-Malvales View MSA
124340371 5266 SBM View MSA
124254332 5268 Malvidae View MSA
124068935 5270 Rosid View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain