Gene : AL6G50830 A. lyrata v2.1

Defline:  (1 of 2) PTHR31707:SF25 - PECTINESTERASE/PECTINESTERASE INHIBITOR 39-RELATED Genomic Order:  3771
Name:  ? AL6G50830 Secondary Identifier:  ? PAC:35928843

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G50830 0.5kb upstream 0.5kb upstream 2712   true scaffold_6: 23792468-23795179 Arabidopsis lyrata
AL6G50830 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 23792468-23792967 Arabidopsis lyrata
AL6G50830 0.5kb downstream 0.5kb downstream 2712   true scaffold_6: 23792968-23795679 Arabidopsis lyrata
AL6G50830 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 23795180-23795679 Arabidopsis lyrata
AL6G50830 1.0kb upstream 1.0kb upstream 3212   true scaffold_6: 23791968-23795179 Arabidopsis lyrata
AL6G50830 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 23791968-23792967 Arabidopsis lyrata
AL6G50830 1.0kb downstream 1.0kb downstream 3212   true scaffold_6: 23792968-23796179 Arabidopsis lyrata
AL6G50830 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 23795180-23796179 Arabidopsis lyrata
AL6G50830 2.0kb upstream 2.0kb upstream 4212   true scaffold_6: 23790968-23795179 Arabidopsis lyrata
AL6G50830 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 23790968-23792967 Arabidopsis lyrata
AL6G50830 2.0kb downstream 2.0kb downstream 4212   true scaffold_6: 23792968-23797179 Arabidopsis lyrata
AL6G50830 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 23795180-23797179 Arabidopsis lyrata
AL6G50830 5.0kb upstream 5.0kb upstream 7212   true scaffold_6: 23787968-23795179 Arabidopsis lyrata
AL6G50830 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 23787968-23792967 Arabidopsis lyrata
AL6G50830 5.0kb downstream 5.0kb downstream 7212   true scaffold_6: 23792968-23800179 Arabidopsis lyrata
AL6G50830 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 23795180-23800179 Arabidopsis lyrata
AL6G50830 10.0kb upstream 10.0kb upstream 12212   true scaffold_6: 23782968-23795179 Arabidopsis lyrata
AL6G50830 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 23782968-23792967 Arabidopsis lyrata
AL6G50830 10.0kb downstream 10.0kb downstream 12212   true scaffold_6: 23792968-23805179 Arabidopsis lyrata
AL6G50830 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 23795180-23805179 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371343 5261 Brassicaceae View MSA
123838203 5264 Brassicales-Malvales View MSA
124343008 5266 SBM View MSA
124253387 5268 Malvidae View MSA
124074194 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain