Gene : AL6G47510 A. lyrata v2.1

Defline:  (1 of 2) PTHR11254//PTHR11254:SF329 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // SUBFAMILY NOT NAMED Genomic Order:  3463
Name:  ? AL6G47510 Secondary Identifier:  ? PAC:35927669

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G47510 0.5kb upstream 0.5kb upstream 4424   true scaffold_6: 22176436-22180859 Arabidopsis lyrata
AL6G47510 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 22176436-22176935 Arabidopsis lyrata
AL6G47510 0.5kb downstream 0.5kb downstream 4424   true scaffold_6: 22176936-22181359 Arabidopsis lyrata
AL6G47510 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 22180860-22181359 Arabidopsis lyrata
AL6G47510 1.0kb upstream 1.0kb upstream 4924   true scaffold_6: 22175936-22180859 Arabidopsis lyrata
AL6G47510 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 22175936-22176935 Arabidopsis lyrata
AL6G47510 1.0kb downstream 1.0kb downstream 4924   true scaffold_6: 22176936-22181859 Arabidopsis lyrata
AL6G47510 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 22180860-22181859 Arabidopsis lyrata
AL6G47510 2.0kb upstream 2.0kb upstream 5924   true scaffold_6: 22174936-22180859 Arabidopsis lyrata
AL6G47510 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 22174936-22176935 Arabidopsis lyrata
AL6G47510 2.0kb downstream 2.0kb downstream 5924   true scaffold_6: 22176936-22182859 Arabidopsis lyrata
AL6G47510 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 22180860-22182859 Arabidopsis lyrata
AL6G47510 5.0kb upstream 5.0kb upstream 8924   true scaffold_6: 22171936-22180859 Arabidopsis lyrata
AL6G47510 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 22171936-22176935 Arabidopsis lyrata
AL6G47510 5.0kb downstream 5.0kb downstream 8924   true scaffold_6: 22176936-22185859 Arabidopsis lyrata
AL6G47510 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 22180860-22185859 Arabidopsis lyrata
AL6G47510 10.0kb upstream 10.0kb upstream 13924   true scaffold_6: 22166936-22180859 Arabidopsis lyrata
AL6G47510 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 22166936-22176935 Arabidopsis lyrata
AL6G47510 10.0kb downstream 10.0kb downstream 13924   true scaffold_6: 22176936-22190859 Arabidopsis lyrata
AL6G47510 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 22180860-22190859 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374842 5261 Brassicaceae View MSA
123835538 5264 Brassicales-Malvales View MSA
124343855 5266 SBM View MSA
124239492 5268 Malvidae View MSA
124063401 5270 Rosid View MSA
123749847 5271 Pentapetalae View MSA
122786985 5272 Eudicot View MSA
122048097 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121348188 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain