Gene : AL6G43080 A. lyrata v2.1

Defline:  (1 of 4) 5.4.2.12 - Phosphoglycerate mutase (2,3-diphosphoglycerate-independent) / Phosphoglyceromutase Genomic Order:  3066
Name:  ? AL6G43080 Secondary Identifier:  ? PAC:35927114

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-1042 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-5723 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL6G43080 0.5kb upstream 0.5kb upstream 2759   true scaffold_6: 19390429-19393187 Arabidopsis lyrata
AL6G43080 0.5kb upstream 0.5kb upstream 500   false scaffold_6: 19392688-19393187 Arabidopsis lyrata
AL6G43080 0.5kb downstream 0.5kb downstream 2759   true scaffold_6: 19389929-19392687 Arabidopsis lyrata
AL6G43080 0.5kb downstream 0.5kb downstream 500   false scaffold_6: 19389929-19390428 Arabidopsis lyrata
AL6G43080 1.0kb upstream 1.0kb upstream 3259   true scaffold_6: 19390429-19393687 Arabidopsis lyrata
AL6G43080 1.0kb upstream 1.0kb upstream 1000   false scaffold_6: 19392688-19393687 Arabidopsis lyrata
AL6G43080 1.0kb downstream 1.0kb downstream 3259   true scaffold_6: 19389429-19392687 Arabidopsis lyrata
AL6G43080 1.0kb downstream 1.0kb downstream 1000   false scaffold_6: 19389429-19390428 Arabidopsis lyrata
AL6G43080 2.0kb upstream 2.0kb upstream 4259   true scaffold_6: 19390429-19394687 Arabidopsis lyrata
AL6G43080 2.0kb upstream 2.0kb upstream 2000   false scaffold_6: 19392688-19394687 Arabidopsis lyrata
AL6G43080 2.0kb downstream 2.0kb downstream 4259   true scaffold_6: 19388429-19392687 Arabidopsis lyrata
AL6G43080 2.0kb downstream 2.0kb downstream 2000   false scaffold_6: 19388429-19390428 Arabidopsis lyrata
AL6G43080 5.0kb upstream 5.0kb upstream 7259   true scaffold_6: 19390429-19397687 Arabidopsis lyrata
AL6G43080 5.0kb upstream 5.0kb upstream 5000   false scaffold_6: 19392688-19397687 Arabidopsis lyrata
AL6G43080 5.0kb downstream 5.0kb downstream 7259   true scaffold_6: 19385429-19392687 Arabidopsis lyrata
AL6G43080 5.0kb downstream 5.0kb downstream 5000   false scaffold_6: 19385429-19390428 Arabidopsis lyrata
AL6G43080 10.0kb upstream 10.0kb upstream 12259   true scaffold_6: 19390429-19402687 Arabidopsis lyrata
AL6G43080 10.0kb upstream 10.0kb upstream 10000   false scaffold_6: 19392688-19402687 Arabidopsis lyrata
AL6G43080 10.0kb downstream 10.0kb downstream 12259   true scaffold_6: 19380429-19392687 Arabidopsis lyrata
AL6G43080 10.0kb downstream 10.0kb downstream 10000   false scaffold_6: 19380429-19390428 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381477 5261 Brassicaceae View MSA
123833203 5264 Brassicales-Malvales View MSA
124336436 5266 SBM View MSA
124239348 5268 Malvidae View MSA
124068115 5270 Rosid View MSA
123752475 5271 Pentapetalae View MSA
122786354 5272 Eudicot View MSA
122046055 5273 Angiosperm View MSA
121343817 5274 Embryophyte View MSA
123428865 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain